{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA412575846",
  "communityStandardTitle": [
    "NM_000444.6(PHEX):c.1763A>G (p.Asn588Ser)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=432175[alleleid]",
        "alleleId": 432175,
        "preferredName": "NM_000444.6(PHEX):c.1763A>G (p.Asn588Ser)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/438520",
        "RCV": [
          "RCV000505440"
        ],
        "variationId": 438520
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22237215A>G?assembly=hg19",
        "id": "chrX:g.22237215A>G"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22219098A>G?assembly=hg38",
        "id": "chrX:g.22219098A>G"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/772130004",
        "rs": 772130004
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/X-22219098-A-G?dataset=gnomad_r4",
        "id": "X-22219098-A-G",
        "variant": "X:22219098 A / G"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "G",
          "end": 22219098,
          "referenceAllele": "A",
          "start": 22219097
        }
      ],
      "hgvs": [
        "NC_000023.11:g.22219098A>G",
        "CM000685.2:g.22219098A>G"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "G",
          "end": 22237215,
          "referenceAllele": "A",
          "start": 22237214
        }
      ],
      "hgvs": [
        "NC_000023.10:g.22237215A>G",
        "CM000685.1:g.22237215A>G"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "G",
          "end": 22147136,
          "referenceAllele": "A",
          "start": 22147135
        }
      ],
      "hgvs": [
        "NC_000023.9:g.22147136A>G"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 191295,
          "referenceAllele": "A",
          "start": 191294
        }
      ],
      "hgvs": [
        "NG_007563.2:g.191295A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000650"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 451,
          "referenceAllele": "A",
          "start": 450
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000682888.1:c.317A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508003.1:p.Asn106Ser",
        "hgvsWellDefined": "ENSP00000508003.1:p.Asn106Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS827876"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 524,
          "referenceAllele": "A",
          "start": 523
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683162.1:c.317A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508059.1:p.Asn106Ser",
        "hgvsWellDefined": "ENSP00000508059.1:p.Asn106Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828146"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 635,
          "referenceAllele": "A",
          "start": 634
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683289.1:c.317A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508195.1:p.Asn106Ser",
        "hgvsWellDefined": "ENSP00000508195.1:p.Asn106Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828270"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 547,
          "referenceAllele": "A",
          "start": 546
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683917.1:n.547A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828883"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 595,
          "referenceAllele": "A",
          "start": 594
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684356.1:c.317A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000507619.1:p.Asn106Ser",
        "hgvsWellDefined": "ENSP00000507619.1:p.Asn106Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS829311"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1437,
          "referenceAllele": "A",
          "start": 1436
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684745.1:n.1437A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829696"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 2444,
          "referenceAllele": "A",
          "start": 2443
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.5:c.1763A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Asn588Ser",
        "hgvsWellDefined": "ENSP00000368682.4:p.Asn588Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1763A>G"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1763A>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Asn588Ser"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Asn588Ser"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 2328,
          "referenceAllele": "A",
          "start": 2327
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.4:c.1763A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Asn588Ser",
        "hgvsWellDefined": "ENSP00000368682.4:p.Asn588Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272467"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645511087",
      "coordinates": [
        {
          "allele": "G",
          "end": 2325,
          "referenceAllele": "A",
          "start": 2324
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.5:c.1763A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Asn588Ser",
        "hgvsWellDefined": "NP_000435.3:p.Asn588Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006506"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013990",
      "coordinates": [
        {
          "allele": "G",
          "end": 2325,
          "referenceAllele": "A",
          "start": 2324
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.1:c.1763A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Asn588Ser",
        "hgvsWellDefined": "NP_001269683.1:p.Asn588Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS022224"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1134,
          "referenceAllele": "A",
          "start": 1133
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545533.1:c.1007A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543835.1:p.Asn336Ser",
        "hgvsWellDefined": "XP_011543835.1:p.Asn336Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112433"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1163,
          "referenceAllele": "A",
          "start": 1162
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545534.1:c.1007A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543836.1:p.Asn336Ser",
        "hgvsWellDefined": "XP_011543836.1:p.Asn336Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112434"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 785,
          "referenceAllele": "A",
          "start": 784
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.1:c.656A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Asn219Ser",
        "hgvsWellDefined": "XP_011543838.1:p.Asn219Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112436"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1048,
          "endIntronDirection": "+",
          "endIntronOffset": 8372,
          "referenceAllele": "T",
          "start": 1048,
          "startIntronDirection": "+",
          "startIntronOffset": 8371
        }
      ],
      "gene": "http://reg.genome.network/gene/GN037703",
      "geneNCBI_id": 100873065,
      "geneSymbol": "PTCHD1-AS",
      "hgvs": [
        "NR_073010.2:n.1048+8372T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS527308"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1167,
          "referenceAllele": "A",
          "start": 1166
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.2:c.656A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Asn219Ser",
        "hgvsWellDefined": "XP_011543838.1:p.Asn219Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556129"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1135,
          "referenceAllele": "A",
          "start": 1134
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_017029579.1:c.1007A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_016885068.1:p.Asn336Ser",
        "hgvsWellDefined": "XP_016885068.1:p.Asn336Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579097"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1865,
          "referenceAllele": "A",
          "start": 1864
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_024452390.1:c.1472A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308158.1:p.Asn491Ser",
        "hgvsWellDefined": "XP_024308158.1:p.Asn491Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS585885"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 2603,
          "referenceAllele": "A",
          "start": 2602
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XR_001755695.1:n.2603A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601328"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645511087",
      "coordinates": [
        {
          "allele": "G",
          "end": 2444,
          "referenceAllele": "A",
          "start": 2443
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.6:c.1763A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Asn588Ser",
        "hgvsWellDefined": "NP_000435.3:p.Asn588Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662448",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1763A>G"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1763A>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Asn588Ser"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Asn588Ser"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013990",
      "coordinates": [
        {
          "allele": "G",
          "end": 2444,
          "referenceAllele": "A",
          "start": 2443
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.2:c.1763A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Asn588Ser",
        "hgvsWellDefined": "NP_001269683.1:p.Asn588Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS681890"
    }
  ],
  "type": "nucleotide"
}