{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA412575751",
  "communityStandardTitle": [
    "NM_000444.6(PHEX):c.1718C>T (p.Ala573Val)"
  ],
  "externalRecords": {
    "COSMIC": [
      {
        "@id": "http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=5877632",
        "active": true,
        "id": "COSM5877632"
      },
      {
        "@id": "http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=5877633",
        "active": true,
        "id": "COSM5877633"
      }
    ],
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=792233[alleleid]",
        "alleleId": 792233,
        "preferredName": "NM_000444.6(PHEX):c.1718C>T (p.Ala573Val)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/803763",
        "RCV": [
          "RCV000990532",
          "RCV003688891"
        ],
        "variationId": 803763
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22237170C>T?assembly=hg19",
        "id": "chrX:g.22237170C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22219053C>T?assembly=hg38",
        "id": "chrX:g.22219053C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/1556135308",
        "rs": 1556135308
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 22219053,
          "referenceAllele": "C",
          "start": 22219052
        }
      ],
      "hgvs": [
        "NC_000023.11:g.22219053C>T",
        "CM000685.2:g.22219053C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 22237170,
          "referenceAllele": "C",
          "start": 22237169
        }
      ],
      "hgvs": [
        "NC_000023.10:g.22237170C>T",
        "CM000685.1:g.22237170C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 22147091,
          "referenceAllele": "C",
          "start": 22147090
        }
      ],
      "hgvs": [
        "NC_000023.9:g.22147091C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 191250,
          "referenceAllele": "C",
          "start": 191249
        }
      ],
      "hgvs": [
        "NG_007563.2:g.191250C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000650"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 406,
          "referenceAllele": "C",
          "start": 405
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000682888.1:c.272C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508003.1:p.Ala91Val",
        "hgvsWellDefined": "ENSP00000508003.1:p.Ala91Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS827876"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 479,
          "referenceAllele": "C",
          "start": 478
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683162.1:c.272C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508059.1:p.Ala91Val",
        "hgvsWellDefined": "ENSP00000508059.1:p.Ala91Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828146"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 590,
          "referenceAllele": "C",
          "start": 589
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683289.1:c.272C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508195.1:p.Ala91Val",
        "hgvsWellDefined": "ENSP00000508195.1:p.Ala91Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828270"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 502,
          "referenceAllele": "C",
          "start": 501
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683917.1:n.502C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828883"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 550,
          "referenceAllele": "C",
          "start": 549
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684356.1:c.272C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000507619.1:p.Ala91Val",
        "hgvsWellDefined": "ENSP00000507619.1:p.Ala91Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS829311"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1392,
          "referenceAllele": "C",
          "start": 1391
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684745.1:n.1392C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829696"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2399,
          "referenceAllele": "C",
          "start": 2398
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.5:c.1718C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Ala573Val",
        "hgvsWellDefined": "ENSP00000368682.4:p.Ala573Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1718C>T"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1718C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Ala573Val"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Ala573Val"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2283,
          "referenceAllele": "C",
          "start": 2282
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.4:c.1718C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Ala573Val",
        "hgvsWellDefined": "ENSP00000368682.4:p.Ala573Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272467"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825172261",
      "coordinates": [
        {
          "allele": "T",
          "end": 2280,
          "referenceAllele": "C",
          "start": 2279
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.5:c.1718C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Ala573Val",
        "hgvsWellDefined": "NP_000435.3:p.Ala573Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006506"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013970",
      "coordinates": [
        {
          "allele": "T",
          "end": 2280,
          "referenceAllele": "C",
          "start": 2279
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.1:c.1718C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Ala573Val",
        "hgvsWellDefined": "NP_001269683.1:p.Ala573Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS022224"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1089,
          "referenceAllele": "C",
          "start": 1088
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545533.1:c.962C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543835.1:p.Ala321Val",
        "hgvsWellDefined": "XP_011543835.1:p.Ala321Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112433"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1118,
          "referenceAllele": "C",
          "start": 1117
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545534.1:c.962C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543836.1:p.Ala321Val",
        "hgvsWellDefined": "XP_011543836.1:p.Ala321Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112434"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 740,
          "referenceAllele": "C",
          "start": 739
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.1:c.611C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Ala204Val",
        "hgvsWellDefined": "XP_011543838.1:p.Ala204Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112436"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1048,
          "endIntronDirection": "+",
          "endIntronOffset": 8417,
          "referenceAllele": "G",
          "start": 1048,
          "startIntronDirection": "+",
          "startIntronOffset": 8416
        }
      ],
      "gene": "http://reg.genome.network/gene/GN037703",
      "geneNCBI_id": 100873065,
      "geneSymbol": "PTCHD1-AS",
      "hgvs": [
        "NR_073010.2:n.1048+8417G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS527308"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1122,
          "referenceAllele": "C",
          "start": 1121
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.2:c.611C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Ala204Val",
        "hgvsWellDefined": "XP_011543838.1:p.Ala204Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556129"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1090,
          "referenceAllele": "C",
          "start": 1089
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_017029579.1:c.962C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016885068.1:p.Ala321Val",
        "hgvsWellDefined": "XP_016885068.1:p.Ala321Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579097"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1820,
          "referenceAllele": "C",
          "start": 1819
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_024452390.1:c.1427C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308158.1:p.Ala476Val",
        "hgvsWellDefined": "XP_024308158.1:p.Ala476Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS585885"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2558,
          "referenceAllele": "C",
          "start": 2557
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XR_001755695.1:n.2558C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601328"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825172261",
      "coordinates": [
        {
          "allele": "T",
          "end": 2399,
          "referenceAllele": "C",
          "start": 2398
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.6:c.1718C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Ala573Val",
        "hgvsWellDefined": "NP_000435.3:p.Ala573Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662448",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1718C>T"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1718C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Ala573Val"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Ala573Val"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013970",
      "coordinates": [
        {
          "allele": "T",
          "end": 2399,
          "referenceAllele": "C",
          "start": 2398
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.2:c.1718C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Ala573Val",
        "hgvsWellDefined": "NP_001269683.1:p.Ala573Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS681890"
    }
  ],
  "type": "nucleotide"
}