{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA412575590",
  "communityStandardTitle": [
    "NM_000444.6(PHEX):c.1646G>C (p.Arg549Pro)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=792231[alleleid]",
        "alleleId": 792231,
        "preferredName": "NM_000444.6(PHEX):c.1646G>C (p.Arg549Pro)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/803761",
        "RCV": [
          "RCV000990530",
          "RCV002549748"
        ],
        "variationId": 803761
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22231021G>C?assembly=hg19",
        "id": "chrX:g.22231021G>C"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22212904G>C?assembly=hg38",
        "id": "chrX:g.22212904G>C"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/1602395717",
        "rs": 1602395717
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22212904,
          "referenceAllele": "G",
          "start": 22212903
        }
      ],
      "hgvs": [
        "NC_000023.11:g.22212904G>C",
        "CM000685.2:g.22212904G>C"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22231021,
          "referenceAllele": "G",
          "start": 22231020
        }
      ],
      "hgvs": [
        "NC_000023.10:g.22231021G>C",
        "CM000685.1:g.22231021G>C"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22140942,
          "referenceAllele": "G",
          "start": 22140941
        }
      ],
      "hgvs": [
        "NC_000023.9:g.22140942G>C"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 185101,
          "referenceAllele": "G",
          "start": 185100
        }
      ],
      "hgvs": [
        "NG_007563.2:g.185101G>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000650"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 334,
          "referenceAllele": "G",
          "start": 333
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000682888.1:c.200G>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508003.1:p.Arg67Pro",
        "hgvsWellDefined": "ENSP00000508003.1:p.Arg67Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS827876"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 407,
          "referenceAllele": "G",
          "start": 406
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683162.1:c.200G>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508059.1:p.Arg67Pro",
        "hgvsWellDefined": "ENSP00000508059.1:p.Arg67Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828146"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 518,
          "referenceAllele": "G",
          "start": 517
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683289.1:c.200G>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508195.1:p.Arg67Pro",
        "hgvsWellDefined": "ENSP00000508195.1:p.Arg67Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828270"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 430,
          "referenceAllele": "G",
          "start": 429
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683917.1:n.430G>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828883"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 478,
          "referenceAllele": "G",
          "start": 477
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684356.1:c.200G>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000507619.1:p.Arg67Pro",
        "hgvsWellDefined": "ENSP00000507619.1:p.Arg67Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS829311"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1320,
          "referenceAllele": "G",
          "start": 1319
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684745.1:n.1320G>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829696"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2327,
          "referenceAllele": "G",
          "start": 2326
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.5:c.1646G>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Arg549Pro",
        "hgvsWellDefined": "ENSP00000368682.4:p.Arg549Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1646G>C"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1646G>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Arg549Pro"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Arg549Pro"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2211,
          "referenceAllele": "G",
          "start": 2210
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.4:c.1646G>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Arg549Pro",
        "hgvsWellDefined": "ENSP00000368682.4:p.Arg549Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272467"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825172251",
      "coordinates": [
        {
          "allele": "C",
          "end": 2208,
          "referenceAllele": "G",
          "start": 2207
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.5:c.1646G>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Arg549Pro",
        "hgvsWellDefined": "NP_000435.3:p.Arg549Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006506"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013948",
      "coordinates": [
        {
          "allele": "C",
          "end": 2208,
          "referenceAllele": "G",
          "start": 2207
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.1:c.1646G>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Arg549Pro",
        "hgvsWellDefined": "NP_001269683.1:p.Arg549Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS022224"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1017,
          "referenceAllele": "G",
          "start": 1016
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545533.1:c.890G>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543835.1:p.Arg297Pro",
        "hgvsWellDefined": "XP_011543835.1:p.Arg297Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112433"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1046,
          "referenceAllele": "G",
          "start": 1045
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545534.1:c.890G>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543836.1:p.Arg297Pro",
        "hgvsWellDefined": "XP_011543836.1:p.Arg297Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112434"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 668,
          "referenceAllele": "G",
          "start": 667
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.1:c.539G>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Arg180Pro",
        "hgvsWellDefined": "XP_011543838.1:p.Arg180Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112436"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1048,
          "endIntronDirection": "-",
          "endIntronOffset": 10133,
          "referenceAllele": "C",
          "start": 1048,
          "startIntronDirection": "-",
          "startIntronOffset": 10134
        }
      ],
      "gene": "http://reg.genome.network/gene/GN037703",
      "geneNCBI_id": 100873065,
      "geneSymbol": "PTCHD1-AS",
      "hgvs": [
        "NR_073010.2:n.1049-10134C>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS527308"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1050,
          "referenceAllele": "G",
          "start": 1049
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.2:c.539G>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Arg180Pro",
        "hgvsWellDefined": "XP_011543838.1:p.Arg180Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556129"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1018,
          "referenceAllele": "G",
          "start": 1017
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_017029579.1:c.890G>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_016885068.1:p.Arg297Pro",
        "hgvsWellDefined": "XP_016885068.1:p.Arg297Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579097"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1748,
          "referenceAllele": "G",
          "start": 1747
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_024452390.1:c.1355G>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308158.1:p.Arg452Pro",
        "hgvsWellDefined": "XP_024308158.1:p.Arg452Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS585885"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2486,
          "referenceAllele": "G",
          "start": 2485
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XR_001755695.1:n.2486G>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601328"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825172251",
      "coordinates": [
        {
          "allele": "C",
          "end": 2327,
          "referenceAllele": "G",
          "start": 2326
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.6:c.1646G>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Arg549Pro",
        "hgvsWellDefined": "NP_000435.3:p.Arg549Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662448",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1646G>C"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1646G>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Arg549Pro"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Arg549Pro"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013948",
      "coordinates": [
        {
          "allele": "C",
          "end": 2327,
          "referenceAllele": "G",
          "start": 2326
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.2:c.1646G>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Arg549Pro",
        "hgvsWellDefined": "NP_001269683.1:p.Arg549Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS681890"
    }
  ],
  "type": "nucleotide"
}