{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA412575565",
  "communityStandardTitle": [
    "NM_000444.6(PHEX):c.2245T>C (p.Trp749Arg)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=432199[alleleid]",
        "alleleId": 432199,
        "preferredName": "NM_000444.6(PHEX):c.2245T>C (p.Trp749Arg)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/438492",
        "RCV": [
          "RCV000505453",
          "RCV001210936"
        ],
        "variationId": 438492
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22266065T>C?assembly=hg19",
        "id": "chrX:g.22266065T>C"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22247948T>C?assembly=hg38",
        "id": "chrX:g.22247948T>C"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/1556206403",
        "rs": 1556206403
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22247948,
          "referenceAllele": "T",
          "start": 22247947
        }
      ],
      "hgvs": [
        "NC_000023.11:g.22247948T>C",
        "CM000685.2:g.22247948T>C"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22266065,
          "referenceAllele": "T",
          "start": 22266064
        }
      ],
      "hgvs": [
        "NC_000023.10:g.22266065T>C",
        "CM000685.1:g.22266065T>C"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22175986,
          "referenceAllele": "T",
          "start": 22175985
        }
      ],
      "hgvs": [
        "NC_000023.9:g.22175986T>C"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 220145,
          "referenceAllele": "T",
          "start": 220144
        }
      ],
      "hgvs": [
        "NG_007563.2:g.220145T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000650"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1131,
          "referenceAllele": "T",
          "start": 1130
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683162.1:c.*183T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508059.1:n.*183T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828146"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 942,
          "endIntronDirection": "+",
          "endIntronOffset": 20337,
          "referenceAllele": "T",
          "start": 942,
          "startIntronDirection": "+",
          "startIntronOffset": 20336
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683289.1:c.624+20337T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508195.1:n.624+20337T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828270"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1029,
          "referenceAllele": "T",
          "start": 1028
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683917.1:n.1029T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828883"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1077,
          "referenceAllele": "T",
          "start": 1076
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684356.1:c.799T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000507619.1:p.Trp267Arg",
        "hgvsWellDefined": "ENSP00000507619.1:p.Trp267Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS829311"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1919,
          "referenceAllele": "T",
          "start": 1918
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684745.1:n.1919T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829696"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2926,
          "referenceAllele": "T",
          "start": 2925
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.5:c.2245T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Trp749Arg",
        "hgvsWellDefined": "ENSP00000368682.4:p.Trp749Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.2245T>C"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.2245T>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Trp749Arg"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Trp749Arg"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2810,
          "referenceAllele": "T",
          "start": 2809
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.4:c.2245T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Trp749Arg",
        "hgvsWellDefined": "ENSP00000368682.4:p.Trp749Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272467"
    },
    {
      "@id": "http://reg.genome.network/allele/PA110068",
      "coordinates": [
        {
          "allele": "C",
          "end": 2807,
          "referenceAllele": "T",
          "start": 2806
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.5:c.2245T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Trp749Arg",
        "hgvsWellDefined": "NP_000435.3:p.Trp749Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006506"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2730,
          "referenceAllele": "T",
          "start": 2729
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.1:c.*80T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:n.*80T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS022224"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1616,
          "referenceAllele": "T",
          "start": 1615
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545533.1:c.1489T>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543835.1:p.Trp497Arg",
        "hgvsWellDefined": "XP_011543835.1:p.Trp497Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112433"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1645,
          "referenceAllele": "T",
          "start": 1644
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545534.1:c.1489T>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543836.1:p.Trp497Arg",
        "hgvsWellDefined": "XP_011543836.1:p.Trp497Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112434"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1267,
          "referenceAllele": "T",
          "start": 1266
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.1:c.1138T>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Trp380Arg",
        "hgvsWellDefined": "XP_011543838.1:p.Trp380Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112436"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 140,
          "endIntronDirection": "+",
          "endIntronOffset": 5991,
          "referenceAllele": "A",
          "start": 140,
          "startIntronDirection": "+",
          "startIntronOffset": 5990
        }
      ],
      "hgvs": [
        "XR_950533.1:n.140+5991A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS143594"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 127,
          "endIntronDirection": "+",
          "endIntronOffset": 5991,
          "referenceAllele": "A",
          "start": 127,
          "startIntronDirection": "+",
          "startIntronOffset": 5990
        }
      ],
      "hgvs": [
        "XR_950534.1:n.127+5991A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS143595"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 850,
          "endIntronDirection": "+",
          "endIntronOffset": 5991,
          "referenceAllele": "A",
          "start": 850,
          "startIntronDirection": "+",
          "startIntronOffset": 5990
        }
      ],
      "gene": "http://reg.genome.network/gene/GN037703",
      "geneNCBI_id": 100873065,
      "geneSymbol": "PTCHD1-AS",
      "hgvs": [
        "NR_073010.2:n.850+5991A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS527308"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1649,
          "referenceAllele": "T",
          "start": 1648
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.2:c.1138T>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Trp380Arg",
        "hgvsWellDefined": "XP_011543838.1:p.Trp380Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556129"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1617,
          "referenceAllele": "T",
          "start": 1616
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_017029579.1:c.1489T>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_016885068.1:p.Trp497Arg",
        "hgvsWellDefined": "XP_016885068.1:p.Trp497Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579097"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2347,
          "referenceAllele": "T",
          "start": 2346
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_024452390.1:c.1954T>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308158.1:p.Trp652Arg",
        "hgvsWellDefined": "XP_024308158.1:p.Trp652Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS585885"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 3085,
          "referenceAllele": "T",
          "start": 3084
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XR_001755695.1:n.3085T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601328"
    },
    {
      "@id": "http://reg.genome.network/allele/PA110068",
      "coordinates": [
        {
          "allele": "C",
          "end": 2926,
          "referenceAllele": "T",
          "start": 2925
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.6:c.2245T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Trp749Arg",
        "hgvsWellDefined": "NP_000435.3:p.Trp749Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662448",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.2245T>C"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.2245T>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Trp749Arg"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Trp749Arg"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2849,
          "referenceAllele": "T",
          "start": 2848
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.2:c.*80T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:n.*80T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS681890"
    }
  ],
  "type": "nucleotide"
}