{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA412574196",
  "communityStandardTitle": [
    "NM_000444.6(PHEX):c.1933G>A (p.Ala645Thr)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=1052383[alleleid]",
        "alleleId": 1052383,
        "preferredName": "NM_000444.6(PHEX):c.1933G>A (p.Ala645Thr)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/1060711",
        "RCV": [
          "RCV001370177"
        ],
        "variationId": 1060711
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22244593G>A?assembly=hg19",
        "id": "chrX:g.22244593G>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22226476G>A?assembly=hg38",
        "id": "chrX:g.22226476G>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/2147183142",
        "rs": 2147183142
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/X-22226476-G-A?dataset=gnomad_r4",
        "id": "X-22226476-G-A",
        "variant": "X:22226476 G / A"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "A",
          "end": 22226476,
          "referenceAllele": "G",
          "start": 22226475
        }
      ],
      "hgvs": [
        "NC_000023.11:g.22226476G>A",
        "CM000685.2:g.22226476G>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "A",
          "end": 22244593,
          "referenceAllele": "G",
          "start": 22244592
        }
      ],
      "hgvs": [
        "NC_000023.10:g.22244593G>A",
        "CM000685.1:g.22244593G>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "A",
          "end": 22154514,
          "referenceAllele": "G",
          "start": 22154513
        }
      ],
      "hgvs": [
        "NC_000023.9:g.22154514G>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 198673,
          "referenceAllele": "G",
          "start": 198672
        }
      ],
      "hgvs": [
        "NG_007563.2:g.198673G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000650"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 621,
          "referenceAllele": "G",
          "start": 620
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000682888.1:c.487G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508003.1:p.Ala163Thr",
        "hgvsWellDefined": "ENSP00000508003.1:p.Ala163Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS827876"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 694,
          "referenceAllele": "G",
          "start": 693
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683162.1:c.487G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508059.1:p.Ala163Thr",
        "hgvsWellDefined": "ENSP00000508059.1:p.Ala163Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828146"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 805,
          "referenceAllele": "G",
          "start": 804
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683289.1:c.487G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508195.1:p.Ala163Thr",
        "hgvsWellDefined": "ENSP00000508195.1:p.Ala163Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828270"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 717,
          "referenceAllele": "G",
          "start": 716
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683917.1:n.717G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828883"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 765,
          "referenceAllele": "G",
          "start": 764
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684356.1:c.487G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000507619.1:p.Ala163Thr",
        "hgvsWellDefined": "ENSP00000507619.1:p.Ala163Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS829311"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1607,
          "referenceAllele": "G",
          "start": 1606
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684745.1:n.1607G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829696"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2614,
          "referenceAllele": "G",
          "start": 2613
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.5:c.1933G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Ala645Thr",
        "hgvsWellDefined": "ENSP00000368682.4:p.Ala645Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1933G>A"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1933G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Ala645Thr"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Ala645Thr"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2498,
          "referenceAllele": "G",
          "start": 2497
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.4:c.1933G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Ala645Thr",
        "hgvsWellDefined": "ENSP00000368682.4:p.Ala645Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272467"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825172305",
      "coordinates": [
        {
          "allele": "A",
          "end": 2495,
          "referenceAllele": "G",
          "start": 2494
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.5:c.1933G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Ala645Thr",
        "hgvsWellDefined": "NP_000435.3:p.Ala645Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006506"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2499245410",
      "coordinates": [
        {
          "allele": "A",
          "end": 2495,
          "referenceAllele": "G",
          "start": 2494
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.1:c.1933G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Ala645Thr",
        "hgvsWellDefined": "NP_001269683.1:p.Ala645Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS022224"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1304,
          "referenceAllele": "G",
          "start": 1303
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545533.1:c.1177G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543835.1:p.Ala393Thr",
        "hgvsWellDefined": "XP_011543835.1:p.Ala393Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112433"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1333,
          "referenceAllele": "G",
          "start": 1332
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545534.1:c.1177G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543836.1:p.Ala393Thr",
        "hgvsWellDefined": "XP_011543836.1:p.Ala393Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112434"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 955,
          "referenceAllele": "G",
          "start": 954
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.1:c.826G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Ala276Thr",
        "hgvsWellDefined": "XP_011543838.1:p.Ala276Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112436"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 325,
          "endIntronDirection": "-",
          "endIntronOffset": 452,
          "referenceAllele": "C",
          "start": 325,
          "startIntronDirection": "-",
          "startIntronOffset": 453
        }
      ],
      "hgvs": [
        "XR_950534.1:n.326-453C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS143595"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1048,
          "endIntronDirection": "+",
          "endIntronOffset": 994,
          "referenceAllele": "C",
          "start": 1048,
          "startIntronDirection": "+",
          "startIntronOffset": 993
        }
      ],
      "gene": "http://reg.genome.network/gene/GN037703",
      "geneNCBI_id": 100873065,
      "geneSymbol": "PTCHD1-AS",
      "hgvs": [
        "NR_073010.2:n.1048+994C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS527308"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1337,
          "referenceAllele": "G",
          "start": 1336
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.2:c.826G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Ala276Thr",
        "hgvsWellDefined": "XP_011543838.1:p.Ala276Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556129"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1305,
          "referenceAllele": "G",
          "start": 1304
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_017029579.1:c.1177G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016885068.1:p.Ala393Thr",
        "hgvsWellDefined": "XP_016885068.1:p.Ala393Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579097"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2035,
          "referenceAllele": "G",
          "start": 2034
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_024452390.1:c.1642G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308158.1:p.Ala548Thr",
        "hgvsWellDefined": "XP_024308158.1:p.Ala548Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS585885"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2773,
          "referenceAllele": "G",
          "start": 2772
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XR_001755695.1:n.2773G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601328"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825172305",
      "coordinates": [
        {
          "allele": "A",
          "end": 2614,
          "referenceAllele": "G",
          "start": 2613
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.6:c.1933G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Ala645Thr",
        "hgvsWellDefined": "NP_000435.3:p.Ala645Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662448",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1933G>A"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1933G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Ala645Thr"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Ala645Thr"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2499245410",
      "coordinates": [
        {
          "allele": "A",
          "end": 2614,
          "referenceAllele": "G",
          "start": 2613
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.2:c.1933G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Ala645Thr",
        "hgvsWellDefined": "NP_001269683.1:p.Ala645Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS681890"
    }
  ],
  "type": "nucleotide"
}