{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA412573942",
  "communityStandardTitle": [
    "NM_000444.6(PHEX):c.1406C>A (p.Ala469Glu)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=432158[alleleid]",
        "alleleId": 432158,
        "preferredName": "NM_000444.6(PHEX):c.1406C>A (p.Ala469Glu)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/438558",
        "RCV": [
          "RCV000505408",
          "RCV001221993"
        ],
        "variationId": 438558
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22186430C>A?assembly=hg19",
        "id": "chrX:g.22186430C>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22168313C>A?assembly=hg38",
        "id": "chrX:g.22168313C>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/375593493",
        "rs": 375593493
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/X-22168313-C-A?dataset=gnomad_r4",
        "id": "X-22168313-C-A",
        "variant": "X:22168313 C / A"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "A",
          "end": 22168313,
          "referenceAllele": "C",
          "start": 22168312
        }
      ],
      "hgvs": [
        "NC_000023.11:g.22168313C>A",
        "CM000685.2:g.22168313C>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "A",
          "end": 22186430,
          "referenceAllele": "C",
          "start": 22186429
        }
      ],
      "hgvs": [
        "NC_000023.10:g.22186430C>A",
        "CM000685.1:g.22186430C>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "A",
          "end": 22096351,
          "referenceAllele": "C",
          "start": 22096350
        }
      ],
      "hgvs": [
        "NC_000023.9:g.22096351C>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 140510,
          "referenceAllele": "C",
          "start": 140509
        }
      ],
      "hgvs": [
        "NG_007563.2:g.140510C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000650"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 94,
          "referenceAllele": "C",
          "start": 93
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000682888.1:c.-41C>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508003.1:n.-41C>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS827876"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 167,
          "referenceAllele": "C",
          "start": 166
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683162.1:c.-41C>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508059.1:n.-41C>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828146"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 278,
          "referenceAllele": "C",
          "start": 277
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683289.1:c.-41C>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508195.1:n.-41C>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828270"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 190,
          "referenceAllele": "C",
          "start": 189
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683917.1:n.190C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828883"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 238,
          "referenceAllele": "C",
          "start": 237
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684356.1:c.-41C>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000507619.1:n.-41C>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS829311"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1080,
          "referenceAllele": "C",
          "start": 1079
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684745.1:n.1080C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829696"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2087,
          "referenceAllele": "C",
          "start": 2086
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.5:c.1406C>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Ala469Glu",
        "hgvsWellDefined": "ENSP00000368682.4:p.Ala469Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1406C>A"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1406C>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Ala469Glu"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Ala469Glu"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1971,
          "referenceAllele": "C",
          "start": 1970
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.4:c.1406C>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Ala469Glu",
        "hgvsWellDefined": "ENSP00000368682.4:p.Ala469Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272467"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645511080",
      "coordinates": [
        {
          "allele": "A",
          "end": 1968,
          "referenceAllele": "C",
          "start": 1967
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.5:c.1406C>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Ala469Glu",
        "hgvsWellDefined": "NP_000435.3:p.Ala469Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006506"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013937",
      "coordinates": [
        {
          "allele": "A",
          "end": 1968,
          "referenceAllele": "C",
          "start": 1967
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.1:c.1406C>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Ala469Glu",
        "hgvsWellDefined": "NP_001269683.1:p.Ala469Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS022224"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1267,
          "endIntronDirection": "+",
          "endIntronOffset": 1481,
          "referenceAllele": "G",
          "start": 1267,
          "startIntronDirection": "+",
          "startIntronOffset": 1480
        }
      ],
      "gene": "http://reg.genome.network/gene/GN040445",
      "geneNCBI_id": 100873942,
      "geneSymbol": "PHEX-AS1",
      "hgvs": [
        "NR_046639.1:n.1267+1481G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS051799"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 777,
          "referenceAllele": "C",
          "start": 776
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545533.1:c.650C>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543835.1:p.Ala217Glu",
        "hgvsWellDefined": "XP_011543835.1:p.Ala217Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112433"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 806,
          "referenceAllele": "C",
          "start": 805
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545534.1:c.650C>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543836.1:p.Ala217Glu",
        "hgvsWellDefined": "XP_011543836.1:p.Ala217Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112434"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 428,
          "referenceAllele": "C",
          "start": 427
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.1:c.299C>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Ala100Glu",
        "hgvsWellDefined": "XP_011543838.1:p.Ala100Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112436"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 810,
          "referenceAllele": "C",
          "start": 809
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.2:c.299C>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Ala100Glu",
        "hgvsWellDefined": "XP_011543838.1:p.Ala100Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556129"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 778,
          "referenceAllele": "C",
          "start": 777
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_017029579.1:c.650C>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016885068.1:p.Ala217Glu",
        "hgvsWellDefined": "XP_016885068.1:p.Ala217Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579097"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1508,
          "referenceAllele": "C",
          "start": 1507
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_024452390.1:c.1115C>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308158.1:p.Ala372Glu",
        "hgvsWellDefined": "XP_024308158.1:p.Ala372Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS585885"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2246,
          "referenceAllele": "C",
          "start": 2245
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XR_001755695.1:n.2246C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601328"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645511080",
      "coordinates": [
        {
          "allele": "A",
          "end": 2087,
          "referenceAllele": "C",
          "start": 2086
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.6:c.1406C>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Ala469Glu",
        "hgvsWellDefined": "NP_000435.3:p.Ala469Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662448",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1406C>A"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1406C>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Ala469Glu"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Ala469Glu"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013937",
      "coordinates": [
        {
          "allele": "A",
          "end": 2087,
          "referenceAllele": "C",
          "start": 2086
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.2:c.1406C>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Ala469Glu",
        "hgvsWellDefined": "NP_001269683.1:p.Ala469Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS681890"
    }
  ],
  "type": "nucleotide"
}