{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA412573835",
  "communityStandardTitle": [
    "NM_000444.6(PHEX):c.1862A>C (p.Gln621Pro)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=792239[alleleid]",
        "alleleId": 792239,
        "preferredName": "NM_000444.6(PHEX):c.1862A>C (p.Gln621Pro)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/803769",
        "RCV": [
          "RCV000990539",
          "RCV003558625"
        ],
        "variationId": 803769
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22239823A>C?assembly=hg19",
        "id": "chrX:g.22239823A>C"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22221706A>C?assembly=hg38",
        "id": "chrX:g.22221706A>C"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/1602405293",
        "rs": 1602405293
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22221706,
          "referenceAllele": "A",
          "start": 22221705
        }
      ],
      "hgvs": [
        "NC_000023.11:g.22221706A>C",
        "CM000685.2:g.22221706A>C"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22239823,
          "referenceAllele": "A",
          "start": 22239822
        }
      ],
      "hgvs": [
        "NC_000023.10:g.22239823A>C",
        "CM000685.1:g.22239823A>C"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "C",
          "end": 22149744,
          "referenceAllele": "A",
          "start": 22149743
        }
      ],
      "hgvs": [
        "NC_000023.9:g.22149744A>C"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 193903,
          "referenceAllele": "A",
          "start": 193902
        }
      ],
      "hgvs": [
        "NG_007563.2:g.193903A>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000650"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 550,
          "referenceAllele": "A",
          "start": 549
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000682888.1:c.416A>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508003.1:p.Gln139Pro",
        "hgvsWellDefined": "ENSP00000508003.1:p.Gln139Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS827876"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 623,
          "referenceAllele": "A",
          "start": 622
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683162.1:c.416A>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508059.1:p.Gln139Pro",
        "hgvsWellDefined": "ENSP00000508059.1:p.Gln139Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828146"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 734,
          "referenceAllele": "A",
          "start": 733
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683289.1:c.416A>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508195.1:p.Gln139Pro",
        "hgvsWellDefined": "ENSP00000508195.1:p.Gln139Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828270"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 646,
          "referenceAllele": "A",
          "start": 645
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683917.1:n.646A>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828883"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 694,
          "referenceAllele": "A",
          "start": 693
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684356.1:c.416A>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000507619.1:p.Gln139Pro",
        "hgvsWellDefined": "ENSP00000507619.1:p.Gln139Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS829311"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1536,
          "referenceAllele": "A",
          "start": 1535
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684745.1:n.1536A>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829696"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2543,
          "referenceAllele": "A",
          "start": 2542
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.5:c.1862A>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Gln621Pro",
        "hgvsWellDefined": "ENSP00000368682.4:p.Gln621Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1862A>C"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1862A>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Gln621Pro"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Gln621Pro"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2427,
          "referenceAllele": "A",
          "start": 2426
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.4:c.1862A>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Gln621Pro",
        "hgvsWellDefined": "ENSP00000368682.4:p.Gln621Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272467"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825172289",
      "coordinates": [
        {
          "allele": "C",
          "end": 2424,
          "referenceAllele": "A",
          "start": 2423
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.5:c.1862A>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Gln621Pro",
        "hgvsWellDefined": "NP_000435.3:p.Gln621Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006506"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013998",
      "coordinates": [
        {
          "allele": "C",
          "end": 2424,
          "referenceAllele": "A",
          "start": 2423
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.1:c.1862A>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Gln621Pro",
        "hgvsWellDefined": "NP_001269683.1:p.Gln621Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS022224"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1233,
          "referenceAllele": "A",
          "start": 1232
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545533.1:c.1106A>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543835.1:p.Gln369Pro",
        "hgvsWellDefined": "XP_011543835.1:p.Gln369Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112433"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1262,
          "referenceAllele": "A",
          "start": 1261
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545534.1:c.1106A>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543836.1:p.Gln369Pro",
        "hgvsWellDefined": "XP_011543836.1:p.Gln369Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112434"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 884,
          "referenceAllele": "A",
          "start": 883
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.1:c.755A>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Gln252Pro",
        "hgvsWellDefined": "XP_011543838.1:p.Gln252Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112436"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1048,
          "endIntronDirection": "+",
          "endIntronOffset": 5764,
          "referenceAllele": "T",
          "start": 1048,
          "startIntronDirection": "+",
          "startIntronOffset": 5763
        }
      ],
      "gene": "http://reg.genome.network/gene/GN037703",
      "geneNCBI_id": 100873065,
      "geneSymbol": "PTCHD1-AS",
      "hgvs": [
        "NR_073010.2:n.1048+5764T>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS527308"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1266,
          "referenceAllele": "A",
          "start": 1265
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.2:c.755A>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Gln252Pro",
        "hgvsWellDefined": "XP_011543838.1:p.Gln252Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556129"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1234,
          "referenceAllele": "A",
          "start": 1233
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_017029579.1:c.1106A>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_016885068.1:p.Gln369Pro",
        "hgvsWellDefined": "XP_016885068.1:p.Gln369Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579097"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1964,
          "referenceAllele": "A",
          "start": 1963
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_024452390.1:c.1571A>C"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308158.1:p.Gln524Pro",
        "hgvsWellDefined": "XP_024308158.1:p.Gln524Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS585885"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 2702,
          "referenceAllele": "A",
          "start": 2701
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XR_001755695.1:n.2702A>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601328"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825172289",
      "coordinates": [
        {
          "allele": "C",
          "end": 2543,
          "referenceAllele": "A",
          "start": 2542
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.6:c.1862A>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Gln621Pro",
        "hgvsWellDefined": "NP_000435.3:p.Gln621Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662448",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1862A>C"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1862A>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Gln621Pro"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Gln621Pro"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013998",
      "coordinates": [
        {
          "allele": "C",
          "end": 2543,
          "referenceAllele": "A",
          "start": 2542
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.2:c.1862A>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Gln621Pro",
        "hgvsWellDefined": "NP_001269683.1:p.Gln621Pro"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS681890"
    }
  ],
  "type": "nucleotide"
}