{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA410502175",
  "communityStandardTitle": [
    "NM_001379500.1(COL18A1):c.3847G>T (p.Gly1283Trp)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=415705[alleleid]",
        "alleleId": 415705,
        "preferredName": "NM_001379500.1(COL18A1):c.3847G>T (p.Gly1283Trp)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/427063",
        "RCV": [
          "RCV000489683"
        ],
        "variationId": 427063
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr21:g.46932139G>T?assembly=hg19",
        "id": "chr21:g.46932139G>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr21:g.45512225G>T?assembly=hg38",
        "id": "chr21:g.45512225G>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/1085307935",
        "rs": 1085307935
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "21",
      "coordinates": [
        {
          "allele": "T",
          "end": 45512225,
          "referenceAllele": "G",
          "start": 45512224
        }
      ],
      "hgvs": [
        "NC_000021.9:g.45512225G>T",
        "CM000683.2:g.45512225G>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000069"
    },
    {
      "chromosome": "21",
      "coordinates": [
        {
          "allele": "T",
          "end": 46932139,
          "referenceAllele": "G",
          "start": 46932138
        }
      ],
      "hgvs": [
        "NC_000021.8:g.46932139G>T",
        "CM000683.1:g.46932139G>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000045"
    },
    {
      "chromosome": "21",
      "coordinates": [
        {
          "allele": "T",
          "end": 45756567,
          "referenceAllele": "G",
          "start": 45756566
        }
      ],
      "hgvs": [
        "NC_000021.7:g.45756567G>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000021"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 112034,
          "referenceAllele": "G",
          "start": 112033
        }
      ],
      "hgvs": [
        "NG_011903.1:g.112034G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS002052"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 55919,
          "referenceAllele": "C",
          "start": 55918
        }
      ],
      "hgvs": [
        "NG_028278.2:g.55919C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS616290"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 4396,
          "referenceAllele": "G",
          "start": 4395
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000355480.10:c.4387G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000347665.5:p.Gly1463Trp",
        "hgvsWellDefined": "ENSP00000347665.5:p.Gly1463Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS748674"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3913,
          "referenceAllele": "G",
          "start": 3912
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000651438.1:c.3847G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000498485.1:p.Gly1283Trp",
        "hgvsWellDefined": "ENSP00000498485.1:p.Gly1283Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS771668",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000651438.1:c.3847G>T"
          },
          "RefSeq": {
            "hgvs": "NM_001379500.1:c.3847G>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000498485.1:p.Gly1283Trp"
          },
          "RefSeq": {
            "hgvs": "NP_001366429.1:p.Gly1283Trp"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1891,
          "referenceAllele": "G",
          "start": 1890
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000342220.9:c.1891G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000339118.5:p.Gly631Trp",
        "hgvsWellDefined": "ENSP00000339118.5:p.Gly631Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS261507"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 4429,
          "referenceAllele": "G",
          "start": 4428
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000355480.9:c.4387G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000347665.5:p.Gly1463Trp",
        "hgvsWellDefined": "ENSP00000347665.5:p.Gly1463Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS263444"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5092,
          "referenceAllele": "G",
          "start": 5091
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000359759.8:c.5092G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000352798.4:p.Gly1698Trp",
        "hgvsWellDefined": "ENSP00000352798.4:p.Gly1698Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS264897"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3941,
          "referenceAllele": "G",
          "start": 3940
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000400337.6:c.3847G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000383191.2:p.Gly1283Trp",
        "hgvsWellDefined": "ENSP00000383191.2:p.Gly1283Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS278999"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 497,
          "endIntronDirection": "+",
          "endIntronOffset": 13592,
          "referenceAllele": "C",
          "start": 497,
          "startIntronDirection": "+",
          "startIntronOffset": 13591
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010937",
      "geneNCBI_id": 6573,
      "geneSymbol": "SLC19A1",
      "hgvs": [
        "ENST00000417954.5:c.497+13592C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS285163"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 801,
          "referenceAllele": "G",
          "start": 800
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000423214.1:c.801G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS287647"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2173,
          "referenceAllele": "G",
          "start": 2172
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000473212.1:n.2173G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS315017"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1617,
          "endIntronDirection": "+",
          "endIntronOffset": 13592,
          "referenceAllele": "C",
          "start": 1617,
          "startIntronDirection": "+",
          "startIntronOffset": 13591
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010937",
      "geneNCBI_id": 6573,
      "geneSymbol": "SLC19A1",
      "hgvs": [
        "ENST00000567670.5:c.1293+13592C>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000457278.1:n.1293+13592C>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS380264"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645420818",
      "coordinates": [
        {
          "allele": "T",
          "end": 4399,
          "referenceAllele": "G",
          "start": 4398
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_030582.3:c.4378G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_085059.2:p.Gly1460Trp",
        "hgvsWellDefined": "NP_085059.2:p.Gly1460Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS038334"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916058740",
      "coordinates": [
        {
          "allele": "T",
          "end": 5104,
          "referenceAllele": "G",
          "start": 5103
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_130444.2:c.5083G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_569711.2:p.Gly1695Trp",
        "hgvsWellDefined": "NP_569711.2:p.Gly1695Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS040368"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3932,
          "referenceAllele": "G",
          "start": 3931
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_130445.3:c.3838G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_569712.2:p.Gly1280Trp",
        "hgvsWellDefined": "NP_569712.2:p.Gly1280Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS040369"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2104,
          "endIntronDirection": "-",
          "endIntronOffset": 9255,
          "referenceAllele": "C",
          "start": 2104,
          "startIntronDirection": "-",
          "startIntronOffset": 9256
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010937",
      "geneNCBI_id": 6573,
      "geneSymbol": "SLC19A1",
      "hgvs": [
        "XM_011529707.1:c.1585-9256C>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011528009.1:n.1585-9256C>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS096773"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2285,
          "endIntronDirection": "-",
          "endIntronOffset": 9255,
          "referenceAllele": "C",
          "start": 2285,
          "startIntronDirection": "-",
          "startIntronOffset": 9256
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010937",
      "geneNCBI_id": 6573,
      "geneSymbol": "SLC19A1",
      "hgvs": [
        "XM_017028445.2:c.1585-9256C>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016883934.1:n.1585-9256C>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS578196"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645420818",
      "coordinates": [
        {
          "allele": "T",
          "end": 4387,
          "referenceAllele": "G",
          "start": 4386
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_030582.4:c.4378G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_085059.2:p.Gly1460Trp",
        "hgvsWellDefined": "NP_085059.2:p.Gly1460Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS670969"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916058740",
      "coordinates": [
        {
          "allele": "T",
          "end": 5092,
          "referenceAllele": "G",
          "start": 5091
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_130444.3:c.5083G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_569711.2:p.Gly1695Trp",
        "hgvsWellDefined": "NP_569711.2:p.Gly1695Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS671793"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3904,
          "referenceAllele": "G",
          "start": 3903
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_130445.4:c.3838G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_569712.2:p.Gly1280Trp",
        "hgvsWellDefined": "NP_569712.2:p.Gly1280Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS671794"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2828834224",
      "coordinates": [
        {
          "allele": "T",
          "end": 3913,
          "referenceAllele": "G",
          "start": 3912
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_001379500.1:c.3847G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001366429.1:p.Gly1283Trp",
        "hgvsWellDefined": "NP_001366429.1:p.Gly1283Trp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS722006",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000651438.1:c.3847G>T"
          },
          "RefSeq": {
            "hgvs": "NM_001379500.1:c.3847G>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000498485.1:p.Gly1283Trp"
          },
          "RefSeq": {
            "hgvs": "NP_001366429.1:p.Gly1283Trp"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}