{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA401409110",
  "communityStandardTitle": [
    "NM_001256071.3(RNF213):c.12050G>A (p.Cys4017Tyr)"
  ],
  "externalRecords": {
    "COSMIC": [
      {
        "@id": "http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=4070471",
        "active": true,
        "id": "COSM4070471"
      },
      {
        "@id": "http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=4070472",
        "active": true,
        "id": "COSM4070472"
      }
    ],
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=2403848[alleleid]",
        "alleleId": 2403848,
        "preferredName": "NM_001256071.3(RNF213):c.12050G>A (p.Cys4017Tyr)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/2430341",
        "RCV": [
          "RCV003128519"
        ],
        "variationId": 2430341
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr17:g.78341838G>A?assembly=hg19",
        "id": "chr17:g.78341838G>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr17:g.80368038G>A?assembly=hg38",
        "id": "chr17:g.80368038G>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/2511483243",
        "rs": 2511483243
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "A",
          "end": 80368038,
          "referenceAllele": "G",
          "start": 80368037
        }
      ],
      "hgvs": [
        "NC_000017.11:g.80368038G>A",
        "CM000679.2:g.80368038G>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000065"
    },
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "A",
          "end": 78341838,
          "referenceAllele": "G",
          "start": 78341837
        }
      ],
      "hgvs": [
        "NC_000017.10:g.78341838G>A",
        "CM000679.1:g.78341838G>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000041"
    },
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "A",
          "end": 75956433,
          "referenceAllele": "G",
          "start": 75956432
        }
      ],
      "hgvs": [
        "NC_000017.9:g.75956433G>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000017"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 112178,
          "referenceAllele": "G",
          "start": 112177
        }
      ],
      "hgvs": [
        "NG_031980.2:g.112178G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS005072"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12209,
          "referenceAllele": "G",
          "start": 12208
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "ENST00000582970.6:c.12050G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000464087.1:p.Cys4017Tyr",
        "hgvsWellDefined": "ENSP00000464087.1:p.Cys4017Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS826217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000582970.6:c.12050G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001256071.3:c.12050G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000464087.1:p.Cys4017Tyr"
          },
          "RefSeq": {
            "hgvs": "NP_001243000.2:p.Cys4017Tyr"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12342,
          "referenceAllele": "G",
          "start": 12341
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "ENST00000508628.6:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000425956.2:p.Cys4066Tyr",
        "hgvsWellDefined": "ENSP00000425956.2:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS339605"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1379,
          "referenceAllele": "G",
          "start": 1378
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "ENST00000558116.5:n.1379G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS373562"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12193,
          "referenceAllele": "G",
          "start": 12192
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "ENST00000582970.5:c.12050G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000464087.1:p.Cys4017Tyr",
        "hgvsWellDefined": "ENSP00000464087.1:p.Cys4017Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS387519"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2826371360",
      "coordinates": [
        {
          "allele": "A",
          "end": 12200,
          "referenceAllele": "G",
          "start": 12199
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "NM_001256071.2:c.12050G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001243000.2:p.Cys4017Tyr",
        "hgvsWellDefined": "NP_001243000.2:p.Cys4017Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS019080"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 240,
          "endIntronDirection": "-",
          "endIntronOffset": 12749,
          "referenceAllele": "C",
          "start": 240,
          "startIntronDirection": "-",
          "startIntronOffset": 12750
        }
      ],
      "gene": "http://reg.genome.network/gene/GN054402",
      "geneNCBI_id": 100294362,
      "geneSymbol": "RNF213-AS1",
      "hgvs": [
        "NR_029376.1:n.241-12750C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS048118"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12368,
          "referenceAllele": "G",
          "start": 12367
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_005257545.3:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005257602.2:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_005257602.2:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS061741"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12246,
          "referenceAllele": "G",
          "start": 12245
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_005257546.3:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005257603.2:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_005257603.2:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS061742"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12510,
          "referenceAllele": "G",
          "start": 12509
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_006721995.2:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_006722058.1:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_006722058.1:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS074361"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12368,
          "referenceAllele": "G",
          "start": 12367
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_011525084.1:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011523386.1:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_011523386.1:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS092203"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12368,
          "referenceAllele": "G",
          "start": 12367
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_011525085.1:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011523387.1:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_011523387.1:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS092204"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12368,
          "referenceAllele": "G",
          "start": 12367
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_011525086.1:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011523388.1:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_011523388.1:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS092205"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12368,
          "referenceAllele": "G",
          "start": 12367
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XR_243676.3:n.12368G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS116578"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12388,
          "referenceAllele": "G",
          "start": 12387
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_005257545.4:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005257602.2:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_005257602.2:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS534676"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12292,
          "referenceAllele": "G",
          "start": 12291
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_005257546.4:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005257603.2:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_005257603.2:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS534677"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12675,
          "referenceAllele": "G",
          "start": 12674
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_006721995.3:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_006722058.1:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_006722058.1:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS540436"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12388,
          "referenceAllele": "G",
          "start": 12387
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_011525084.2:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011523386.1:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_011523386.1:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS547724"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12388,
          "referenceAllele": "G",
          "start": 12387
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_011525086.2:c.12197G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011523388.1:p.Cys4066Tyr",
        "hgvsWellDefined": "XP_011523388.1:p.Cys4066Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS547725"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 11457,
          "referenceAllele": "G",
          "start": 11456
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "XM_017024905.2:c.11192G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016880394.1:p.Cys3731Tyr",
        "hgvsWellDefined": "XP_016880394.1:p.Cys3731Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS575349"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2826371360",
      "coordinates": [
        {
          "allele": "A",
          "end": 12209,
          "referenceAllele": "G",
          "start": 12208
        }
      ],
      "gene": "http://reg.genome.network/gene/GN014539",
      "geneNCBI_id": 57674,
      "geneSymbol": "RNF213",
      "hgvs": [
        "NM_001256071.3:c.12050G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001243000.2:p.Cys4017Tyr",
        "hgvsWellDefined": "NP_001243000.2:p.Cys4017Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS680490",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000582970.6:c.12050G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001256071.3:c.12050G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000464087.1:p.Cys4017Tyr"
          },
          "RefSeq": {
            "hgvs": "NP_001243000.2:p.Cys4017Tyr"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}