{ "@context": "http://reg.genome.network/schema/allele.jsonld", "@id": "http://reg.genome.network/allele/CA397692368", "communityStandardTitle": [ "NM_004937.3(CTNS):c.735G>A (p.Trp245Ter)" ], "externalRecords": { "ClinVarAlleles": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=1064158[alleleid]", "alleleId": 1064158, "preferredName": "NM_004937.3(CTNS):c.735G>A (p.Trp245Ter)" } ], "ClinVarVariations": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/1076859", "RCV": [ "RCV002551580" ], "variationId": 1076859 } ], "MyVariantInfo_hg19": [ { "@id": "http://myvariant.info/v1/variant/chr17:g.3561352G>A?assembly=hg19", "id": "chr17:g.3561352G>A" } ], "MyVariantInfo_hg38": [ { "@id": "http://myvariant.info/v1/variant/chr17:g.3658058G>A?assembly=hg38", "id": "chr17:g.3658058G>A" } ], "dbSNP": [ { "@id": "http://www.ncbi.nlm.nih.gov/snp/2150925108", "rs": 2150925108 } ] }, "genomicAlleles": [ { "chromosome": "17", "coordinates": [ { "allele": "A", "end": 3658058, "referenceAllele": "G", "start": 3658057 } ], "hgvs": [ "NC_000017.11:g.3658058G>A", "CM000679.2:g.3658058G>A" ], "referenceGenome": "GRCh38", "referenceSequence": "http://reg.genome.network/refseq/RS000065" }, { "chromosome": "17", "coordinates": [ { "allele": "A", "end": 3561352, "referenceAllele": "G", "start": 3561351 } ], "hgvs": [ "NC_000017.10:g.3561352G>A", "CM000679.1:g.3561352G>A" ], "referenceGenome": "GRCh37", "referenceSequence": "http://reg.genome.network/refseq/RS000041" }, { "chromosome": "17", "coordinates": [ { "allele": "A", "end": 3508101, "referenceAllele": "G", "start": 3508100 } ], "hgvs": [ "NC_000017.9:g.3508101G>A" ], "referenceGenome": "NCBI36", "referenceSequence": "http://reg.genome.network/refseq/RS000017" }, { "coordinates": [ { "allele": "A", "end": 26591, "referenceAllele": "G", "start": 26590 } ], "hgvs": [ "NG_012489.1:g.26591G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS002417" }, { "coordinates": [ { "allele": "A", "end": 26591, "referenceAllele": "G", "start": 26590 } ], "hgvs": [ "NG_012489.2:g.26591G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS673597" } ], "transcriptAlleles": [ { "coordinates": [ { "allele": "A", "end": 1036, "referenceAllele": "G", "start": 1035 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "ENST00000046640.9:c.735G>A" ], "proteinEffect": { "hgvs": "ENSP00000046640.4:p.Trp245Ter", "hgvsWellDefined": "ENSP00000046640.4:p.Trp245_Asn367delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS739992", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000046640.9:c.735G>A" }, "RefSeq": { "hgvs": "NM_004937.3:c.735G>A" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000046640.4:p.Trp245Ter" }, "RefSeq": { "hgvs": "NP_004928.2:p.Trp245Ter" } } } }, { "coordinates": [ { "allele": "A", "end": 1214, "referenceAllele": "G", "start": 1213 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "ENST00000381870.8:c.735G>A" ], "proteinEffect": { "hgvs": "ENSP00000371294.3:p.Trp245Ter", "hgvsWellDefined": "ENSP00000371294.3:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS752588" }, { "coordinates": [ { "allele": "A", "end": 951, "referenceAllele": "G", "start": 950 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "ENST00000488623.6:c.-19G>A" ], "proteinEffect": { "hgvs": "ENSP00000501016.1:n.-19G>A" }, "referenceSequence": "http://reg.genome.network/refseq/RS757597" }, { "coordinates": [ { "allele": "A", "end": 799, "referenceAllele": "G", "start": 798 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "ENST00000574776.6:c.294G>A" ], "proteinEffect": { "hgvs": "ENSP00000461118.2:p.Trp98Ter", "hgvsWellDefined": "ENSP00000461118.2:p.Trp98_Gly253delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS760747" }, { "coordinates": [ { "allele": "A", "end": 905, "referenceAllele": "G", "start": 904 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "ENST00000673669.1:c.294G>A" ], "proteinEffect": { "hgvs": "ENSP00000501123.1:p.Trp98Ter", "hgvsWellDefined": "ENSP00000501123.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS773771" }, { "coordinates": [ { "allele": "A", "end": 1209, "referenceAllele": "G", "start": 1208 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "ENST00000673965.1:c.735G>A" ], "proteinEffect": { "hgvs": "ENSP00000500995.1:p.Trp245Ter", "hgvsWellDefined": "ENSP00000500995.1:p.Trp245_Asn367delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS774008" }, { "coordinates": [ { "allele": "A", "end": 1328, "referenceAllele": "G", "start": 1327 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "ENST00000046640.7:c.735G>A" ], "proteinEffect": { "hgvs": "ENSP00000046640.3:p.Trp245Ter", "hgvsWellDefined": "ENSP00000046640.3:p.Trp245_Asn367delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS247553" }, { "coordinates": [ { "allele": "A", "end": 1194, "referenceAllele": "G", "start": 1193 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "ENST00000381870.7:c.735G>A" ], "proteinEffect": { "hgvs": "ENSP00000371294.3:p.Trp245Ter", "hgvsWellDefined": "ENSP00000371294.3:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS273532" }, { "@id": "http://reg.genome.network/allele/PA2825348027", "coordinates": [ { "allele": "A", "end": 1205, "referenceAllele": "G", "start": 1204 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_001031681.2:c.735G>A" ], "proteinEffect": { "hgvs": "NP_001026851.2:p.Trp245Ter", "hgvsWellDefined": "NP_001026851.2:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS008984" }, { "@id": "http://reg.genome.network/allele/PA645484968", "coordinates": [ { "allele": "A", "end": 1328, "referenceAllele": "G", "start": 1327 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_004937.2:c.735G>A" ], "proteinEffect": { "hgvs": "NP_004928.2:p.Trp245Ter", "hgvsWellDefined": "NP_004928.2:p.Trp245_Asn367delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS030071" }, { "coordinates": [ { "allele": "A", "end": 1328, "referenceAllele": "G", "start": 1327 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_005256485.1:c.735G>A" ], "proteinEffect": { "hgvs": "XP_005256542.1:p.Trp245Ter", "hgvsWellDefined": "XP_005256542.1:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS061334" }, { "coordinates": [ { "allele": "A", "end": 1188, "referenceAllele": "G", "start": 1187 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_006721463.1:c.735G>A" ], "proteinEffect": { "hgvs": "XP_006721526.1:p.Trp245Ter", "hgvsWellDefined": "XP_006721526.1:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS074084" }, { "coordinates": [ { "allele": "A", "end": 1243, "referenceAllele": "G", "start": 1242 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_006721464.1:c.294G>A" ], "proteinEffect": { "hgvs": "XP_006721527.1:p.Trp98Ter", "hgvsWellDefined": "XP_006721527.1:p.Trp98_Gly253delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS074085" }, { "coordinates": [ { "allele": "A", "end": 1127, "referenceAllele": "G", "start": 1126 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_011523691.1:c.735G>A" ], "proteinEffect": { "hgvs": "XP_011521993.1:p.Trp245Ter", "hgvsWellDefined": "XP_011521993.1:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS090824" }, { "coordinates": [ { "allele": "A", "end": 1248, "referenceAllele": "G", "start": 1247 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_011523692.1:c.294G>A" ], "proteinEffect": { "hgvs": "XP_011521994.1:p.Trp98Ter", "hgvsWellDefined": "XP_011521994.1:p.Trp98_Gly253delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS090825" }, { "coordinates": [ { "allele": "A", "end": 1328, "referenceAllele": "G", "start": 1327 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XR_934003.1:n.1328G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS129449" }, { "coordinates": [ { "allele": "A", "end": 1326, "referenceAllele": "G", "start": 1325 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_005256485.3:c.735G>A" ], "proteinEffect": { "hgvs": "XP_005256542.1:p.Trp245Ter", "hgvsWellDefined": "XP_005256542.1:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS534485" }, { "coordinates": [ { "allele": "A", "end": 1188, "referenceAllele": "G", "start": 1187 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_006721463.3:c.735G>A" ], "proteinEffect": { "hgvs": "XP_006721526.1:p.Trp245Ter", "hgvsWellDefined": "XP_006721526.1:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS540299" }, { "coordinates": [ { "allele": "A", "end": 1243, "referenceAllele": "G", "start": 1242 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_006721464.2:c.294G>A" ], "proteinEffect": { "hgvs": "XP_006721527.1:p.Trp98Ter", "hgvsWellDefined": "XP_006721527.1:p.Trp98_Gly253delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS540300" }, { "coordinates": [ { "allele": "A", "end": 1127, "referenceAllele": "G", "start": 1126 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_011523691.2:c.735G>A" ], "proteinEffect": { "hgvs": "XP_011521993.1:p.Trp245Ter", "hgvsWellDefined": "XP_011521993.1:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS547127" }, { "coordinates": [ { "allele": "A", "end": 1248, "referenceAllele": "G", "start": 1247 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_011523692.2:c.294G>A" ], "proteinEffect": { "hgvs": "XP_011521994.1:p.Trp98Ter", "hgvsWellDefined": "XP_011521994.1:p.Trp98_Gly253delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS547128" }, { "coordinates": [ { "allele": "A", "end": 1164, "referenceAllele": "G", "start": 1163 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_017024254.1:c.294G>A" ], "proteinEffect": { "hgvs": "XP_016879743.1:p.Trp98Ter", "hgvsWellDefined": "XP_016879743.1:p.Trp98_Gly253delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS574853" }, { "coordinates": [ { "allele": "A", "end": 1243, "referenceAllele": "G", "start": 1242 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_017024255.1:c.294G>A" ], "proteinEffect": { "hgvs": "XP_016879744.1:p.Trp98Ter", "hgvsWellDefined": "XP_016879744.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS574854" }, { "coordinates": [ { "allele": "A", "end": 1248, "referenceAllele": "G", "start": 1247 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_017024256.1:c.294G>A" ], "proteinEffect": { "hgvs": "XP_016879745.1:p.Trp98Ter", "hgvsWellDefined": "XP_016879745.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS574855" }, { "coordinates": [ { "allele": "A", "end": 1164, "referenceAllele": "G", "start": 1163 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_017024257.1:c.294G>A" ], "proteinEffect": { "hgvs": "XP_016879746.1:p.Trp98Ter", "hgvsWellDefined": "XP_016879746.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS574856" }, { "coordinates": [ { "allele": "A", "end": 1163, "referenceAllele": "G", "start": 1162 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "XM_017024258.1:c.294G>A" ], "proteinEffect": { "hgvs": "XP_016879747.1:p.Trp98Ter", "hgvsWellDefined": "XP_016879747.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS574857" }, { "@id": "http://reg.genome.network/allele/PA2828523108", "coordinates": [ { "allele": "A", "end": 1036, "referenceAllele": "G", "start": 1035 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_001374492.1:c.735G>A" ], "proteinEffect": { "hgvs": "NP_001361421.1:p.Trp245Ter", "hgvsWellDefined": "NP_001361421.1:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS693298" }, { "@id": "http://reg.genome.network/allele/PA2828523344", "coordinates": [ { "allele": "A", "end": 951, "referenceAllele": "G", "start": 950 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_001374493.1:c.294G>A" ], "proteinEffect": { "hgvs": "NP_001361422.1:p.Trp98Ter", "hgvsWellDefined": "NP_001361422.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS693299" }, { "@id": "http://reg.genome.network/allele/PA2828523580", "coordinates": [ { "allele": "A", "end": 956, "referenceAllele": "G", "start": 955 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_001374494.1:c.294G>A" ], "proteinEffect": { "hgvs": "NP_001361423.1:p.Trp98Ter", "hgvsWellDefined": "NP_001361423.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS693300" }, { "@id": "http://reg.genome.network/allele/PA2828523818", "coordinates": [ { "allele": "A", "end": 872, "referenceAllele": "G", "start": 871 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_001374495.1:c.294G>A" ], "proteinEffect": { "hgvs": "NP_001361424.1:p.Trp98Ter", "hgvsWellDefined": "NP_001361424.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS693301" }, { "@id": "http://reg.genome.network/allele/PA2499254983", "coordinates": [ { "allele": "A", "end": 871, "referenceAllele": "G", "start": 870 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_001374496.1:c.294G>A" ], "proteinEffect": { "hgvs": "NP_001361425.1:p.Trp98Ter", "hgvsWellDefined": "NP_001361425.1:p.Trp98_Asn220delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS693302" }, { "@id": "http://reg.genome.network/allele/PA645484968", "coordinates": [ { "allele": "A", "end": 1036, "referenceAllele": "G", "start": 1035 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_004937.3:c.735G>A" ], "proteinEffect": { "hgvs": "NP_004928.2:p.Trp245Ter", "hgvsWellDefined": "NP_004928.2:p.Trp245_Asn367delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyTyrAspGlnLeuAsnTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS696276", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000046640.9:c.735G>A" }, "RefSeq": { "hgvs": "NM_004937.3:c.735G>A" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000046640.4:p.Trp245Ter" }, "RefSeq": { "hgvs": "NP_004928.2:p.Trp245Ter" } } } }, { "@id": "http://reg.genome.network/allele/PA2825348027", "coordinates": [ { "allele": "A", "end": 1214, "referenceAllele": "G", "start": 1213 } ], "gene": "http://reg.genome.network/gene/GN002518", "geneNCBI_id": 1497, "geneSymbol": "CTNS", "hgvs": [ "NM_001031681.3:c.735G>A" ], "proteinEffect": { "hgvs": "NP_001026851.2:p.Trp245Ter", "hgvsWellDefined": "NP_001026851.2:p.Trp245_Gly400delinsLeuPheAlaPheValThrMetIleValAlaAlaValGlyValThrThrTrpLeuGlnPheLeuPheCysPheSerTyrIleLysLeuAlaValThrLeuValLysTyrPheProGlnAlaTyrMetAsnPheTyrTyrLysSerThrGluGlyTrpSerIleGlyAsnValLeuLeuAspPheThrGlyGlySerPheSerLeuLeuGlnMetPheLeuGlnSerTyrAsnAsnAspGlnTrpThrLeuIlePheGlyAspProThrLysPheGlyLeuGlyValPheSerIleValPheAspValValPhePheIleGlnHisPheCysLeuTyrArgLysArgProGlyLeuGlnAlaAlaArgThrGlySerGlySerArgLeuArgGlnAspTrpAlaProSerLeuGlnProLysAlaLeuProGlnThrThrSerValSerAlaSerSerLeuLysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS711482" } ], "type": "nucleotide" }