{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA384552404",
  "communityStandardTitle": [
    "NM_001844.5(COL2A1):c.1520G>A (p.Gly507Glu)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=621380[alleleid]",
        "alleleId": 621380,
        "preferredName": "NM_001844.5(COL2A1):c.1520G>A (p.Gly507Glu)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/633177",
        "RCV": [
          "RCV000781310"
        ],
        "variationId": 633177
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr12:g.48380126C>T?assembly=hg19",
        "id": "chr12:g.48380126C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr12:g.47986343C>T?assembly=hg38",
        "id": "chr12:g.47986343C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/868417981",
        "rs": 868417981
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 47986343,
          "referenceAllele": "C",
          "start": 47986342
        }
      ],
      "hgvs": [
        "NC_000012.12:g.47986343C>T",
        "CM000674.2:g.47986343C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000060"
    },
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 48380126,
          "referenceAllele": "C",
          "start": 48380125
        }
      ],
      "hgvs": [
        "NC_000012.11:g.48380126C>T",
        "CM000674.1:g.48380126C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000036"
    },
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 46666393,
          "referenceAllele": "C",
          "start": 46666392
        }
      ],
      "hgvs": [
        "NC_000012.10:g.46666393C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000012"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 23160,
          "referenceAllele": "G",
          "start": 23159
        }
      ],
      "hgvs": [
        "NG_008072.1:g.23160G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000817"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1498,
          "referenceAllele": "G",
          "start": 1497
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000337299.7:c.1313G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000338213.6:p.Gly438Glu",
        "hgvsWellDefined": "ENSP00000338213.6:p.Gly438Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS747643"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1675,
          "referenceAllele": "G",
          "start": 1674
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000380518.8:c.1520G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000369889.3:p.Gly507Glu",
        "hgvsWellDefined": "ENSP00000369889.3:p.Gly507Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752395",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000380518.8:c.1520G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001844.5:c.1520G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000369889.3:p.Gly507Glu"
          },
          "RefSeq": {
            "hgvs": "NP_001835.3:p.Gly507Glu"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1313,
          "referenceAllele": "G",
          "start": 1312
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000337299.6:c.1313G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000338213.6:p.Gly438Glu",
        "hgvsWellDefined": "ENSP00000338213.6:p.Gly438Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS260445"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1685,
          "referenceAllele": "G",
          "start": 1684
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000380518.7:c.1520G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000369889.3:p.Gly507Glu",
        "hgvsWellDefined": "ENSP00000369889.3:p.Gly507Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272956"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 444,
          "referenceAllele": "G",
          "start": 443
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000493991.5:n.444G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS331026"
    },
    {
      "@id": "http://reg.genome.network/allele/PA913196581",
      "coordinates": [
        {
          "allele": "A",
          "end": 1701,
          "referenceAllele": "G",
          "start": 1700
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_001844.4:c.1520G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001835.3:p.Gly507Glu",
        "hgvsWellDefined": "NP_001835.3:p.Gly507Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS027172"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830097506",
      "coordinates": [
        {
          "allele": "A",
          "end": 1494,
          "referenceAllele": "G",
          "start": 1493
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_033150.2:c.1313G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_149162.2:p.Gly438Glu",
        "hgvsWellDefined": "NP_149162.2:p.Gly438Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS039568"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2253,
          "referenceAllele": "G",
          "start": 2252
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_006719242.2:c.1664G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_006719305.2:p.Gly555Glu",
        "hgvsWellDefined": "XP_006719305.2:p.Gly555Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS073018"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2430,
          "referenceAllele": "G",
          "start": 2429
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537928.1:c.1664G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536230.1:p.Gly555Glu",
        "hgvsWellDefined": "XP_011536230.1:p.Gly555Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104886"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2021,
          "referenceAllele": "G",
          "start": 2020
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537929.1:c.1664G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536231.1:p.Gly555Glu",
        "hgvsWellDefined": "XP_011536231.1:p.Gly555Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104887"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2022,
          "referenceAllele": "G",
          "start": 2021
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537930.1:c.1664G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536232.1:p.Gly555Glu",
        "hgvsWellDefined": "XP_011536232.1:p.Gly555Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104888"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2004,
          "referenceAllele": "G",
          "start": 2003
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537931.1:c.1664G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536233.1:p.Gly555Glu",
        "hgvsWellDefined": "XP_011536233.1:p.Gly555Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104889"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2348,
          "referenceAllele": "G",
          "start": 2347
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537932.1:c.1664G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536234.1:p.Gly555Glu",
        "hgvsWellDefined": "XP_011536234.1:p.Gly555Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104890"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1982,
          "referenceAllele": "G",
          "start": 1981
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537933.1:c.1664G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536235.1:p.Gly555Glu",
        "hgvsWellDefined": "XP_011536235.1:p.Gly555Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104891"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2427,
          "referenceAllele": "G",
          "start": 2426
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537934.1:c.1661G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536236.1:p.Gly554Glu",
        "hgvsWellDefined": "XP_011536236.1:p.Gly554Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104892"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 956,
          "referenceAllele": "G",
          "start": 955
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537935.1:c.608G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536237.1:p.Gly203Glu",
        "hgvsWellDefined": "XP_011536237.1:p.Gly203Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104893"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1786,
          "referenceAllele": "G",
          "start": 1785
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018828.1:c.1664G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874317.1:p.Gly555Glu",
        "hgvsWellDefined": "XP_016874317.1:p.Gly555Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570670"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1783,
          "referenceAllele": "G",
          "start": 1782
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018829.1:c.1661G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874318.1:p.Gly554Glu",
        "hgvsWellDefined": "XP_016874318.1:p.Gly554Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570671"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1576,
          "referenceAllele": "G",
          "start": 1575
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018830.1:c.1454G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874319.1:p.Gly485Glu",
        "hgvsWellDefined": "XP_016874319.1:p.Gly485Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570672"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2009,
          "referenceAllele": "G",
          "start": 2008
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018831.2:c.974G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874320.1:p.Gly325Glu",
        "hgvsWellDefined": "XP_016874320.1:p.Gly325Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570673"
    },
    {
      "@id": "http://reg.genome.network/allele/PA913196581",
      "coordinates": [
        {
          "allele": "A",
          "end": 1675,
          "referenceAllele": "G",
          "start": 1674
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_001844.5:c.1520G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001835.3:p.Gly507Glu",
        "hgvsWellDefined": "NP_001835.3:p.Gly507Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS665206",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000380518.8:c.1520G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001844.5:c.1520G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000369889.3:p.Gly507Glu"
          },
          "RefSeq": {
            "hgvs": "NP_001835.3:p.Gly507Glu"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830097506",
      "coordinates": [
        {
          "allele": "A",
          "end": 1468,
          "referenceAllele": "G",
          "start": 1467
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_033150.3:c.1313G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_149162.2:p.Gly438Glu",
        "hgvsWellDefined": "NP_149162.2:p.Gly438Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS699283"
    }
  ],
  "type": "nucleotide"
}