{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA384541366",
  "communityStandardTitle": [
    "NM_001844.5(COL2A1):c.2941G>A (p.Gly981Ser)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=1691604[alleleid]",
        "alleleId": 1691604,
        "preferredName": "NM_001844.5(COL2A1):c.2941G>A (p.Gly981Ser)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/1699230",
        "RCV": [
          "RCV002273087"
        ],
        "variationId": 1699230
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr12:g.48372136C>T?assembly=hg19",
        "id": "chr12:g.48372136C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr12:g.47978353C>T?assembly=hg38",
        "id": "chr12:g.47978353C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/2136526515",
        "rs": 2136526515
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/12-47978353-C-T?dataset=gnomad_r4",
        "id": "12-47978353-C-T",
        "variant": "12:47978353 C / T"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 47978353,
          "referenceAllele": "C",
          "start": 47978352
        }
      ],
      "hgvs": [
        "NC_000012.12:g.47978353C>T",
        "CM000674.2:g.47978353C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000060"
    },
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 48372136,
          "referenceAllele": "C",
          "start": 48372135
        }
      ],
      "hgvs": [
        "NC_000012.11:g.48372136C>T",
        "CM000674.1:g.48372136C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000036"
    },
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 46658403,
          "referenceAllele": "C",
          "start": 46658402
        }
      ],
      "hgvs": [
        "NC_000012.10:g.46658403C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000012"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 31150,
          "referenceAllele": "G",
          "start": 31149
        }
      ],
      "hgvs": [
        "NG_008072.1:g.31150G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000817"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2919,
          "referenceAllele": "G",
          "start": 2918
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000337299.7:c.2734G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000338213.6:p.Gly912Ser",
        "hgvsWellDefined": "ENSP00000338213.6:p.Gly912Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS747643"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3096,
          "referenceAllele": "G",
          "start": 3095
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000380518.8:c.2941G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000369889.3:p.Gly981Ser",
        "hgvsWellDefined": "ENSP00000369889.3:p.Gly981Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752395",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000380518.8:c.2941G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001844.5:c.2941G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000369889.3:p.Gly981Ser"
          },
          "RefSeq": {
            "hgvs": "NP_001835.3:p.Gly981Ser"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2734,
          "referenceAllele": "G",
          "start": 2733
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000337299.6:c.2734G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000338213.6:p.Gly912Ser",
        "hgvsWellDefined": "ENSP00000338213.6:p.Gly912Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS260445"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3106,
          "referenceAllele": "G",
          "start": 3105
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000380518.7:c.2941G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000369889.3:p.Gly981Ser",
        "hgvsWellDefined": "ENSP00000369889.3:p.Gly981Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272956"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2027,
          "referenceAllele": "G",
          "start": 2026
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000493991.5:n.2027G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS331026"
    },
    {
      "@id": "http://reg.genome.network/allele/PA098253",
      "coordinates": [
        {
          "allele": "A",
          "end": 3122,
          "referenceAllele": "G",
          "start": 3121
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_001844.4:c.2941G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001835.3:p.Gly981Ser",
        "hgvsWellDefined": "NP_001835.3:p.Gly981Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS027172"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830098297",
      "coordinates": [
        {
          "allele": "A",
          "end": 2915,
          "referenceAllele": "G",
          "start": 2914
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_033150.2:c.2734G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_149162.2:p.Gly912Ser",
        "hgvsWellDefined": "NP_149162.2:p.Gly912Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS039568"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3674,
          "referenceAllele": "G",
          "start": 3673
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_006719242.2:c.3085G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_006719305.2:p.Gly1029Ser",
        "hgvsWellDefined": "XP_006719305.2:p.Gly1029Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS073018"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3851,
          "referenceAllele": "G",
          "start": 3850
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537928.1:c.3085G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536230.1:p.Gly1029Ser",
        "hgvsWellDefined": "XP_011536230.1:p.Gly1029Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104886"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3442,
          "referenceAllele": "G",
          "start": 3441
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537929.1:c.3085G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536231.1:p.Gly1029Ser",
        "hgvsWellDefined": "XP_011536231.1:p.Gly1029Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104887"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3443,
          "referenceAllele": "G",
          "start": 3442
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537930.1:c.3085G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536232.1:p.Gly1029Ser",
        "hgvsWellDefined": "XP_011536232.1:p.Gly1029Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104888"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3425,
          "referenceAllele": "G",
          "start": 3424
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537931.1:c.3085G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536233.1:p.Gly1029Ser",
        "hgvsWellDefined": "XP_011536233.1:p.Gly1029Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104889"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3769,
          "referenceAllele": "G",
          "start": 3768
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537932.1:c.3085G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536234.1:p.Gly1029Ser",
        "hgvsWellDefined": "XP_011536234.1:p.Gly1029Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104890"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3403,
          "referenceAllele": "G",
          "start": 3402
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537933.1:c.3085G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536235.1:p.Gly1029Ser",
        "hgvsWellDefined": "XP_011536235.1:p.Gly1029Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104891"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3848,
          "referenceAllele": "G",
          "start": 3847
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537934.1:c.3082G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536236.1:p.Gly1028Ser",
        "hgvsWellDefined": "XP_011536236.1:p.Gly1028Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104892"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2377,
          "referenceAllele": "G",
          "start": 2376
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537935.1:c.2029G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536237.1:p.Gly677Ser",
        "hgvsWellDefined": "XP_011536237.1:p.Gly677Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104893"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3207,
          "referenceAllele": "G",
          "start": 3206
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018828.1:c.3085G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874317.1:p.Gly1029Ser",
        "hgvsWellDefined": "XP_016874317.1:p.Gly1029Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570670"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3204,
          "referenceAllele": "G",
          "start": 3203
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018829.1:c.3082G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874318.1:p.Gly1028Ser",
        "hgvsWellDefined": "XP_016874318.1:p.Gly1028Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570671"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2997,
          "referenceAllele": "G",
          "start": 2996
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018830.1:c.2875G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874319.1:p.Gly959Ser",
        "hgvsWellDefined": "XP_016874319.1:p.Gly959Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570672"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3430,
          "referenceAllele": "G",
          "start": 3429
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018831.2:c.2395G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874320.1:p.Gly799Ser",
        "hgvsWellDefined": "XP_016874320.1:p.Gly799Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570673"
    },
    {
      "@id": "http://reg.genome.network/allele/PA098253",
      "coordinates": [
        {
          "allele": "A",
          "end": 3096,
          "referenceAllele": "G",
          "start": 3095
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_001844.5:c.2941G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001835.3:p.Gly981Ser",
        "hgvsWellDefined": "NP_001835.3:p.Gly981Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS665206",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000380518.8:c.2941G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001844.5:c.2941G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000369889.3:p.Gly981Ser"
          },
          "RefSeq": {
            "hgvs": "NP_001835.3:p.Gly981Ser"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830098297",
      "coordinates": [
        {
          "allele": "A",
          "end": 2889,
          "referenceAllele": "G",
          "start": 2888
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_033150.3:c.2734G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_149162.2:p.Gly912Ser",
        "hgvsWellDefined": "NP_149162.2:p.Gly912Ser"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS699283"
    }
  ],
  "type": "nucleotide"
}