{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA384540693",
  "communityStandardTitle": [
    "NM_001844.5(COL2A1):c.3077G>A (p.Gly1026Asp)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=2848912[alleleid]",
        "alleleId": 2848912,
        "preferredName": "NM_001844.5(COL2A1):c.3077G>A (p.Gly1026Asp)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/2687876",
        "RCV": [
          "RCV003485995"
        ],
        "variationId": 2687876
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr12:g.48371827C>T?assembly=hg19",
        "id": "chr12:g.48371827C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr12:g.47978044C>T?assembly=hg38",
        "id": "chr12:g.47978044C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/1555165336",
        "rs": 1555165336
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 47978044,
          "referenceAllele": "C",
          "start": 47978043
        }
      ],
      "hgvs": [
        "NC_000012.12:g.47978044C>T",
        "CM000674.2:g.47978044C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000060"
    },
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 48371827,
          "referenceAllele": "C",
          "start": 48371826
        }
      ],
      "hgvs": [
        "NC_000012.11:g.48371827C>T",
        "CM000674.1:g.48371827C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000036"
    },
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "T",
          "end": 46658094,
          "referenceAllele": "C",
          "start": 46658093
        }
      ],
      "hgvs": [
        "NC_000012.10:g.46658094C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000012"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 31459,
          "referenceAllele": "G",
          "start": 31458
        }
      ],
      "hgvs": [
        "NG_008072.1:g.31459G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000817"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3055,
          "referenceAllele": "G",
          "start": 3054
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000337299.7:c.2870G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000338213.6:p.Gly957Asp",
        "hgvsWellDefined": "ENSP00000338213.6:p.Gly957Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS747643"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3232,
          "referenceAllele": "G",
          "start": 3231
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000380518.8:c.3077G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000369889.3:p.Gly1026Asp",
        "hgvsWellDefined": "ENSP00000369889.3:p.Gly1026Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752395",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000380518.8:c.3077G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001844.5:c.3077G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000369889.3:p.Gly1026Asp"
          },
          "RefSeq": {
            "hgvs": "NP_001835.3:p.Gly1026Asp"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2870,
          "referenceAllele": "G",
          "start": 2869
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000337299.6:c.2870G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000338213.6:p.Gly957Asp",
        "hgvsWellDefined": "ENSP00000338213.6:p.Gly957Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS260445"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3242,
          "referenceAllele": "G",
          "start": 3241
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000380518.7:c.3077G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000369889.3:p.Gly1026Asp",
        "hgvsWellDefined": "ENSP00000369889.3:p.Gly1026Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272956"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2163,
          "referenceAllele": "G",
          "start": 2162
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "ENST00000493991.5:n.2163G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS331026"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829344765",
      "coordinates": [
        {
          "allele": "A",
          "end": 3258,
          "referenceAllele": "G",
          "start": 3257
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_001844.4:c.3077G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001835.3:p.Gly1026Asp",
        "hgvsWellDefined": "NP_001835.3:p.Gly1026Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS027172"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2742001874",
      "coordinates": [
        {
          "allele": "A",
          "end": 3051,
          "referenceAllele": "G",
          "start": 3050
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_033150.2:c.2870G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_149162.2:p.Gly957Asp",
        "hgvsWellDefined": "NP_149162.2:p.Gly957Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS039568"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3810,
          "referenceAllele": "G",
          "start": 3809
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_006719242.2:c.3221G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_006719305.2:p.Gly1074Asp",
        "hgvsWellDefined": "XP_006719305.2:p.Gly1074Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS073018"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3987,
          "referenceAllele": "G",
          "start": 3986
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537928.1:c.3221G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536230.1:p.Gly1074Asp",
        "hgvsWellDefined": "XP_011536230.1:p.Gly1074Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104886"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3578,
          "referenceAllele": "G",
          "start": 3577
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537929.1:c.3221G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536231.1:p.Gly1074Asp",
        "hgvsWellDefined": "XP_011536231.1:p.Gly1074Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104887"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3579,
          "referenceAllele": "G",
          "start": 3578
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537930.1:c.3221G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536232.1:p.Gly1074Asp",
        "hgvsWellDefined": "XP_011536232.1:p.Gly1074Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104888"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3561,
          "referenceAllele": "G",
          "start": 3560
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537931.1:c.3221G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536233.1:p.Gly1074Asp",
        "hgvsWellDefined": "XP_011536233.1:p.Gly1074Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104889"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3905,
          "referenceAllele": "G",
          "start": 3904
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537932.1:c.3221G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536234.1:p.Gly1074Asp",
        "hgvsWellDefined": "XP_011536234.1:p.Gly1074Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104890"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3539,
          "referenceAllele": "G",
          "start": 3538
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537933.1:c.3221G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536235.1:p.Gly1074Asp",
        "hgvsWellDefined": "XP_011536235.1:p.Gly1074Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104891"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3984,
          "referenceAllele": "G",
          "start": 3983
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537934.1:c.3218G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536236.1:p.Gly1073Asp",
        "hgvsWellDefined": "XP_011536236.1:p.Gly1073Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104892"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2513,
          "referenceAllele": "G",
          "start": 2512
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_011537935.1:c.2165G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011536237.1:p.Gly722Asp",
        "hgvsWellDefined": "XP_011536237.1:p.Gly722Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS104893"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3343,
          "referenceAllele": "G",
          "start": 3342
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018828.1:c.3221G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874317.1:p.Gly1074Asp",
        "hgvsWellDefined": "XP_016874317.1:p.Gly1074Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570670"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3340,
          "referenceAllele": "G",
          "start": 3339
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018829.1:c.3218G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874318.1:p.Gly1073Asp",
        "hgvsWellDefined": "XP_016874318.1:p.Gly1073Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570671"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3133,
          "referenceAllele": "G",
          "start": 3132
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018830.1:c.3011G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874319.1:p.Gly1004Asp",
        "hgvsWellDefined": "XP_016874319.1:p.Gly1004Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570672"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3566,
          "referenceAllele": "G",
          "start": 3565
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "XM_017018831.2:c.2531G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016874320.1:p.Gly844Asp",
        "hgvsWellDefined": "XP_016874320.1:p.Gly844Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS570673"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829344765",
      "coordinates": [
        {
          "allele": "A",
          "end": 3232,
          "referenceAllele": "G",
          "start": 3231
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_001844.5:c.3077G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001835.3:p.Gly1026Asp",
        "hgvsWellDefined": "NP_001835.3:p.Gly1026Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS665206",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000380518.8:c.3077G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001844.5:c.3077G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000369889.3:p.Gly1026Asp"
          },
          "RefSeq": {
            "hgvs": "NP_001835.3:p.Gly1026Asp"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2742001874",
      "coordinates": [
        {
          "allele": "A",
          "end": 3025,
          "referenceAllele": "G",
          "start": 3024
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002200",
      "geneNCBI_id": 1280,
      "geneSymbol": "COL2A1",
      "hgvs": [
        "NM_033150.3:c.2870G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_149162.2:p.Gly957Asp",
        "hgvsWellDefined": "NP_149162.2:p.Gly957Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS699283"
    }
  ],
  "type": "nucleotide"
}