{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA379096151",
  "communityStandardTitle": [
    "NM_001909.5(CTSD):c.550A>T (p.Lys184Ter)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=2169279[alleleid]",
        "alleleId": 2169279,
        "preferredName": "NM_001909.5(CTSD):c.550A>T (p.Lys184Ter)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/2103629",
        "RCV": [
          "RCV003022249"
        ],
        "variationId": 2103629
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr11:g.1778708T>A?assembly=hg19",
        "id": "chr11:g.1778708T>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr11:g.1757478T>A?assembly=hg38",
        "id": "chr11:g.1757478T>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/2493823652",
        "rs": 2493823652
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "A",
          "end": 1757478,
          "referenceAllele": "T",
          "start": 1757477
        }
      ],
      "hgvs": [
        "NC_000011.10:g.1757478T>A",
        "CM000673.2:g.1757478T>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000059"
    },
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "A",
          "end": 1778708,
          "referenceAllele": "T",
          "start": 1778707
        }
      ],
      "hgvs": [
        "NC_000011.9:g.1778708T>A",
        "CM000673.1:g.1778708T>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000035"
    },
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "A",
          "end": 1735284,
          "referenceAllele": "T",
          "start": 1735283
        }
      ],
      "hgvs": [
        "NC_000011.8:g.1735284T>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000011"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 11515,
          "referenceAllele": "A",
          "start": 11514
        }
      ],
      "hgvs": [
        "NG_008655.1:g.11515A>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001148"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 618,
          "referenceAllele": "A",
          "start": 617
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000236671.7:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000236671.2:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000236671.2:p.Lys184_Leu412delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS740984",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000236671.7:c.550A>T"
          },
          "RefSeq": {
            "hgvs": "NM_001909.5:c.550A>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000236671.2:p.Lys184Ter"
          },
          "RefSeq": {
            "hgvs": "NP_001900.1:p.Lys184Ter"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 753,
          "referenceAllele": "A",
          "start": 752
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000367196.4:c.445A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000356164.4:p.Lys149Ter",
        "hgvsWellDefined": "ENSP00000356164.4:p.Lys149_Leu377delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS749955"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 536,
          "referenceAllele": "A",
          "start": 535
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000429746.2:c.445A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000402586.2:p.Lys149Ter",
        "hgvsWellDefined": "ENSP00000402586.2:p.Lys149_Leu377delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS755290"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 621,
          "referenceAllele": "A",
          "start": 620
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000433655.6:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000404902.1:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000404902.1:p.Lys184_Gln276delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS755471"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 618,
          "referenceAllele": "A",
          "start": 617
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000438213.6:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000415036.2:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000415036.2:p.Lys184_Leu451delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnSerProGluGlyArgArgValGlnProSerGlnGlyArgGlySerGlnGlyGlyAlaLeuGlyProGlnGlyThrLeuGlnSerArgGlnGlyLeuHisAlaLeuThrProArgArgValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS755690"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 623,
          "referenceAllele": "A",
          "start": 622
        }
      ],
      "hgvs": [
        "ENST00000636397.1:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000489910.1:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000489910.1:p.Lys184_Ser582delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysAlaGlnGlyProGlyGlnCysProAlaProLeuGlyAspProAlaSerThrThrAspGlyAlaGlnGluAlaArgValProLeuAspGlyAlaPheTrpIleProArgProProAlaGlySerProLysGlyCysPheAlaCysValSerLysProProAlaLeuGlnAlaProAlaAlaProAlaProGluProSerAlaSerProProMetAlaProThrLeuPheProMetGluSerLysSerSerLysThrAspSerValArgAlaAlaGlyAlaProProAlaCysLysHisLeuAlaGluLysLysThrMetThrAsnProThrThrValIleGluValTyrProAspThrThrGluValAsnAspTyrTyrLeuTrpSerIlePheAsnPheValTyrLeuAsnPheCysCysLeuGlyPheIleAlaLeuAlaTyrSerLeuLysProArgLeuGluTrpProArgProAspValLeuHisGlnCysSerCysProAlaGlyTrpGlyArgArgGlnGlyMetGlnGlyGluLysArgLeuGlyArgGlyTrpLeuGlyGlyArgThrProGlyGlnLeuArgLeuCysSerIleLeuGluLeuGluProHisProAlaArgHisArgAsnCysGlyArgArgSerProProAlaProAspSerSerTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS763082"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 597,
          "referenceAllele": "A",
          "start": 596
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000636571.1:c.529A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000490770.1:p.Lys177Ter",
        "hgvsWellDefined": "ENSP00000490770.1:p.Lys177_Leu405delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS763216"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 645,
          "referenceAllele": "A",
          "start": 644
        }
      ],
      "hgvs": [
        "ENST00000636615.1:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000490014.1:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000490014.1:p.Lys184_Tyr557delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysAlaGlnGlyProGlyGlnCysProAlaProLeuGlyAspProAlaSerThrThrAspGlyAlaGlnGluAlaArgValProLeuAspGlyAlaPheTrpIleProArgProProAlaGlySerProLysGlyCysPheAlaCysValSerLysProProAlaLeuGlnAlaProAlaAlaProAlaProGluProSerAlaSerProProMetAlaProThrLeuPheProMetGluSerLysSerSerLysThrAspSerValArgAlaAlaGlyAlaProProAlaCysLysHisLeuAlaGluLysLysThrMetThrAsnProThrThrValIleGluValTyrProAspThrThrGluValAsnAspTyrTyrLeuTrpSerIlePheAsnPheValTyrLeuAsnPheCysCysLeuGlyPheIleAlaLeuAlaTyrSerLeuLysValArgAspLysLysLeuLeuAsnAspLeuAsnGlyAlaValGluAspAlaLysThrAlaArgLeuPheAsnIleThrSerSerAlaLeuAlaAlaSerCysIleIleLeuValPheIlePheLeuArgTyrProLeuThrAspTyrTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS763252"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 633,
          "referenceAllele": "A",
          "start": 632
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000636843.1:c.544A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000490897.1:p.Lys182Ter",
        "hgvsWellDefined": "ENSP00000490897.1:p.Lys182_Leu410delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS763422"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 148,
          "referenceAllele": "A",
          "start": 147
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000637158.1:n.148A>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS763652"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2978,
          "referenceAllele": "A",
          "start": 2977
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000637381.2:n.2978A>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS763824"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 632,
          "referenceAllele": "A",
          "start": 631
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000637387.1:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000490598.1:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000490598.1:p.Lys184_Leu405delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS763827"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 597,
          "referenceAllele": "A",
          "start": 596
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000637815.2:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000490344.1:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000490344.1:p.Lys184_Leu406delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS764130"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 587,
          "referenceAllele": "A",
          "start": 586
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000637915.1:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000490471.1:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000490471.1:p.Lys184_Leu409delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS764206"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 945,
          "referenceAllele": "A",
          "start": 944
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000677300.1:n.945A>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS776963"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 761,
          "referenceAllele": "A",
          "start": 760
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000678991.1:c.*411A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000503019.1:n.*411A>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS778626"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 683,
          "referenceAllele": "A",
          "start": 682
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000236671.6:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000236671.2:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000236671.2:p.Lys184_Leu412delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS248971"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 753,
          "referenceAllele": "A",
          "start": 752
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000367196.3:c.445A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000356164.3:p.Lys149Ter",
        "hgvsWellDefined": "ENSP00000356164.3:p.Lys149Ter"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS266257"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 162,
          "referenceAllele": "A",
          "start": 161
        }
      ],
      "hgvs": [
        "ENST00000427721.2:c.-51A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000415840.2:n.-51A>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS289837"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 592,
          "referenceAllele": "A",
          "start": 591
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000433655.5:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000404902.1:p.Lys184Ter",
        "hgvsWellDefined": "ENSP00000404902.1:p.Lys184_Gln276delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS292643"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 554,
          "referenceAllele": "A",
          "start": 553
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "ENST00000438213.5:c.505A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000415036.1:p.Lys169Ter",
        "hgvsWellDefined": "ENSP00000415036.1:p.Lys169_Ala299del"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS294817"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2580260951",
      "coordinates": [
        {
          "allele": "T",
          "end": 683,
          "referenceAllele": "A",
          "start": 682
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "NM_001909.4:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001900.1:p.Lys184Ter",
        "hgvsWellDefined": "NP_001900.1:p.Lys184_Leu412delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS027236"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2580260951",
      "coordinates": [
        {
          "allele": "T",
          "end": 618,
          "referenceAllele": "A",
          "start": 617
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002529",
      "geneNCBI_id": 1509,
      "geneSymbol": "CTSD",
      "hgvs": [
        "NM_001909.5:c.550A>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001900.1:p.Lys184Ter",
        "hgvsWellDefined": "NP_001900.1:p.Lys184_Leu412delinsGlnProGlyIleThrPheIleAlaAlaLysPheAspGlyIleLeuGlyMetAlaTyrProArgIleSerValAsnAsnValLeuProValPheAspAsnLeuMetGlnGlnLysLeuValAspGlnAsnIlePheSerPheTyrLeuSerArgAspProAspAlaGlnProGlyGlyGluLeuMetLeuGlyGlyThrAspSerLysTyrTyrLysGlySerLeuSerTyrLeuAsnValThrArgLysAlaTyrTrpGlnValHisLeuAspGlnValGluValAlaSerGlyLeuThrLeuCysLysGluGlyCysGluAlaIleValAspThrGlyThrSerLeuMetValGlyProValAspGluValArgGluLeuGlnLysAlaIleGlyAlaValProLeuIleGlnGlyGluTyrMetIleProCysGluLysValSerThrLeuProAlaIleThrLeuLysLeuGlyGlyLysGlyTyrLysLeuSerProGluAspTyrThrLeuLysValSerGlnAlaGlyLysThrLeuCysLeuSerGlyPheMetGlyMetAspIleProProProSerGlyProLeuTrpIleLeuGlyAspValPheIleGlyArgTyrTyrThrValPheAspArgAspAsnAsnArgValGlyPheAlaGluAlaAlaArgLeuTer"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS665240",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000236671.7:c.550A>T"
          },
          "RefSeq": {
            "hgvs": "NM_001909.5:c.550A>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000236671.2:p.Lys184Ter"
          },
          "RefSeq": {
            "hgvs": "NP_001900.1:p.Lys184Ter"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}