{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA378257873",
  "communityStandardTitle": [
    "NM_000278.5(PAX2):c.254G>A (p.Gly85Asp)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=3395184[alleleid]",
        "alleleId": 3395184,
        "preferredName": "NM_000278.5(PAX2):c.254G>A (p.Gly85Asp)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/3236065",
        "RCV": [
          "RCV004555326"
        ],
        "variationId": 3236065
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr10:g.102510492G>A?assembly=hg19",
        "id": "chr10:g.102510492G>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr10:g.100750735G>A?assembly=hg38",
        "id": "chr10:g.100750735G>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/2133836347",
        "rs": 2133836347
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "10",
      "coordinates": [
        {
          "allele": "A",
          "end": 100750735,
          "referenceAllele": "G",
          "start": 100750734
        }
      ],
      "hgvs": [
        "NC_000010.11:g.100750735G>A",
        "CM000672.2:g.100750735G>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000058"
    },
    {
      "chromosome": "10",
      "coordinates": [
        {
          "allele": "A",
          "end": 102510492,
          "referenceAllele": "G",
          "start": 102510491
        }
      ],
      "hgvs": [
        "NC_000010.10:g.102510492G>A",
        "CM000672.1:g.102510492G>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000034"
    },
    {
      "chromosome": "10",
      "coordinates": [
        {
          "allele": "A",
          "end": 102500482,
          "referenceAllele": "G",
          "start": 102500481
        }
      ],
      "hgvs": [
        "NC_000010.9:g.102500482G>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000010"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 10025,
          "referenceAllele": "G",
          "start": 10024
        }
      ],
      "hgvs": [
        "NG_008680.1:g.10025G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001165"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 20027,
          "referenceAllele": "G",
          "start": 20026
        }
      ],
      "hgvs": [
        "NG_008680.2:g.20027G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS616108"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 660,
          "referenceAllele": "G",
          "start": 659
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000707078.1:c.347G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000516729.1:p.Gly116Asp",
        "hgvsWellDefined": "ENSP00000516729.1:p.Gly116Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS913309"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 933,
          "referenceAllele": "G",
          "start": 932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000707079.1:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000516730.1:p.Gly85Asp",
        "hgvsWellDefined": "ENSP00000516730.1:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS913310"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 933,
          "referenceAllele": "G",
          "start": 932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000355243.8:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000347385.3:p.Gly85Asp",
        "hgvsWellDefined": "ENSP00000347385.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS748645",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000355243.8:c.254G>A"
          },
          "RefSeq": {
            "hgvs": "NM_000278.5:c.254G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000347385.3:p.Gly85Asp"
          },
          "RefSeq": {
            "hgvs": "NP_000269.3:p.Gly85Asp"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 933,
          "referenceAllele": "G",
          "start": 932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000427256.6:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000398652.2:p.Gly85Asp",
        "hgvsWellDefined": "ENSP00000398652.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS755171"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 549,
          "referenceAllele": "G",
          "start": 548
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000679374.1:c.236G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000506041.1:p.Gly79Asp",
        "hgvsWellDefined": "ENSP00000506041.1:p.Gly79Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS779007"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000355243.7:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000347385.2:p.Gly85Asp",
        "hgvsWellDefined": "ENSP00000347385.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS263376"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 292,
          "referenceAllele": "G",
          "start": 291
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000361791.7:c.251G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000355069.4:p.Gly84Asp",
        "hgvsWellDefined": "ENSP00000355069.4:p.Gly84Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS265657"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000370296.6:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000359319.3:p.Gly85Asp",
        "hgvsWellDefined": "ENSP00000359319.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS267981"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 287,
          "referenceAllele": "G",
          "start": 286
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000427256.5:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000398652.1:p.Gly85Asp",
        "hgvsWellDefined": "ENSP00000398652.1:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS289612"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000428433.5:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000396259.1:p.Gly85Asp",
        "hgvsWellDefined": "ENSP00000396259.1:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS290196"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 131,
          "endIntronDirection": "+",
          "endIntronOffset": 15002,
          "referenceAllele": "G",
          "start": 131,
          "startIntronDirection": "+",
          "startIntronOffset": 15001
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000553492.5:n.131+15002G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS369896"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1107,
          "referenceAllele": "G",
          "start": 1106
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000554172.2:c.266G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000452489.2:p.Gly89Asp",
        "hgvsWellDefined": "ENSP00000452489.2:p.Gly89Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS370429"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 125,
          "endIntronDirection": "+",
          "endIntronOffset": 4432,
          "referenceAllele": "G",
          "start": 125,
          "startIntronDirection": "+",
          "startIntronOffset": 4431
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "ENST00000554363.2:n.125+4432G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS370582"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_000278.3:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000269.2:p.Gly85Asp",
        "hgvsWellDefined": "NP_000269.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006340"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2826896265",
      "coordinates": [
        {
          "allele": "A",
          "end": 347,
          "referenceAllele": "G",
          "start": 346
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_001304569.1:c.347G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001291498.1:p.Gly116Asp",
        "hgvsWellDefined": "NP_001291498.1:p.Gly116Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS025773"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003987.3:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003978.2:p.Gly85Asp",
        "hgvsWellDefined": "NP_003978.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029188"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829479754",
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003988.3:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003979.2:p.Gly85Asp",
        "hgvsWellDefined": "NP_003979.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029189"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003989.3:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003980.2:p.Gly85Asp",
        "hgvsWellDefined": "NP_003980.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029190"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003990.3:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003981.2:p.Gly85Asp",
        "hgvsWellDefined": "NP_003981.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029191"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825138363",
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_000278.4:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000269.3:p.Gly85Asp",
        "hgvsWellDefined": "NP_000269.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS510775"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829479425",
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003987.4:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003978.3:p.Gly85Asp",
        "hgvsWellDefined": "NP_003978.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS525158"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829479754",
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003988.4:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003979.2:p.Gly85Asp",
        "hgvsWellDefined": "NP_003979.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS525159"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829480165",
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003989.4:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003980.3:p.Gly85Asp",
        "hgvsWellDefined": "NP_003980.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS525160"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829480435",
      "coordinates": [
        {
          "allele": "A",
          "end": 804,
          "referenceAllele": "G",
          "start": 803
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003990.4:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003981.3:p.Gly85Asp",
        "hgvsWellDefined": "NP_003981.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS525161"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825138363",
      "coordinates": [
        {
          "allele": "A",
          "end": 933,
          "referenceAllele": "G",
          "start": 932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_000278.5:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000269.3:p.Gly85Asp",
        "hgvsWellDefined": "NP_000269.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS674773",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000355243.8:c.254G>A"
          },
          "RefSeq": {
            "hgvs": "NM_000278.5:c.254G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000347385.3:p.Gly85Asp"
          },
          "RefSeq": {
            "hgvs": "NP_000269.3:p.Gly85Asp"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2826896265",
      "coordinates": [
        {
          "allele": "A",
          "end": 660,
          "referenceAllele": "G",
          "start": 659
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_001304569.2:c.347G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001291498.1:p.Gly116Asp",
        "hgvsWellDefined": "NP_001291498.1:p.Gly116Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS683727"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829479425",
      "coordinates": [
        {
          "allele": "A",
          "end": 933,
          "referenceAllele": "G",
          "start": 932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003987.5:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003978.3:p.Gly85Asp",
        "hgvsWellDefined": "NP_003978.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696006"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829479754",
      "coordinates": [
        {
          "allele": "A",
          "end": 933,
          "referenceAllele": "G",
          "start": 932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003988.5:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003979.2:p.Gly85Asp",
        "hgvsWellDefined": "NP_003979.2:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696007"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829480165",
      "coordinates": [
        {
          "allele": "A",
          "end": 933,
          "referenceAllele": "G",
          "start": 932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003989.5:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003980.3:p.Gly85Asp",
        "hgvsWellDefined": "NP_003980.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696008"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829480435",
      "coordinates": [
        {
          "allele": "A",
          "end": 933,
          "referenceAllele": "G",
          "start": 932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008616",
      "geneNCBI_id": 5076,
      "geneSymbol": "PAX2",
      "hgvs": [
        "NM_003990.5:c.254G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_003981.3:p.Gly85Asp",
        "hgvsWellDefined": "NP_003981.3:p.Gly85Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696009"
    }
  ],
  "type": "nucleotide"
}