{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA352503277",
  "communityStandardTitle": [
    "NM_000316.3(PTH1R):c.1373T>A (p.Ile458Lys)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=1016264[alleleid]",
        "alleleId": 1016264,
        "preferredName": "NM_000316.3(PTH1R):c.1373T>A (p.Ile458Lys)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/1030731",
        "RCV": [
          "RCV001332362"
        ],
        "variationId": 1030731
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr3:g.46944258T>A?assembly=hg19",
        "id": "chr3:g.46944258T>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr3:g.46902768T>A?assembly=hg38",
        "id": "chr3:g.46902768T>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/121434600",
        "rs": 121434600
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "3",
      "coordinates": [
        {
          "allele": "A",
          "end": 46902768,
          "referenceAllele": "T",
          "start": 46902767
        }
      ],
      "hgvs": [
        "NC_000003.12:g.46902768T>A",
        "CM000665.2:g.46902768T>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000051"
    },
    {
      "chromosome": "3",
      "coordinates": [
        {
          "allele": "A",
          "end": 46944258,
          "referenceAllele": "T",
          "start": 46944257
        }
      ],
      "hgvs": [
        "NC_000003.11:g.46944258T>A",
        "CM000665.1:g.46944258T>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000027"
    },
    {
      "chromosome": "3",
      "coordinates": [
        {
          "allele": "A",
          "end": 46919262,
          "referenceAllele": "T",
          "start": 46919261
        }
      ],
      "hgvs": [
        "NC_000003.10:g.46919262T>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000003"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 30023,
          "referenceAllele": "T",
          "start": 30022
        }
      ],
      "hgvs": [
        "NG_008864.1:g.30023T>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001259"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1601,
          "referenceAllele": "T",
          "start": 1600
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "ENST00000449590.6:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000402723.1:p.Ile458Lys",
        "hgvsWellDefined": "ENSP00000402723.1:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS756238",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000449590.6:c.1373T>A"
          },
          "RefSeq": {
            "hgvs": "NM_000316.3:c.1373T>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000402723.1:p.Ile458Lys"
          },
          "RefSeq": {
            "hgvs": "NP_000307.1:p.Ile458Lys"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1576,
          "referenceAllele": "T",
          "start": 1575
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "ENST00000313049.9:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000321999.4:p.Ile458Lys",
        "hgvsWellDefined": "ENSP00000321999.4:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS256758"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1522,
          "referenceAllele": "T",
          "start": 1521
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "ENST00000418619.5:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000411424.1:p.Ile458Lys",
        "hgvsWellDefined": "ENSP00000411424.1:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS285487"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 89,
          "referenceAllele": "T",
          "start": 88
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "ENST00000422115.2:c.89T>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000396176.1:p.Ile30Lys",
        "hgvsWellDefined": "ENSP00000396176.1:p.Ile30Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS287123"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1706,
          "referenceAllele": "T",
          "start": 1705
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "ENST00000427125.6:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000400977.2:p.Ile458Lys",
        "hgvsWellDefined": "ENSP00000400977.2:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS289543"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1515,
          "referenceAllele": "T",
          "start": 1514
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "ENST00000428220.1:c.*310T>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000389811.1:n.*310T>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS290091"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1439,
          "referenceAllele": "T",
          "start": 1438
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "ENST00000430002.6:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000413774.2:p.Ile458Lys",
        "hgvsWellDefined": "ENSP00000413774.2:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS290935"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1576,
          "referenceAllele": "T",
          "start": 1575
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "ENST00000449590.5:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000402723.1:p.Ile458Lys",
        "hgvsWellDefined": "ENSP00000402723.1:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS300290"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825119516",
      "coordinates": [
        {
          "allele": "A",
          "end": 1576,
          "referenceAllele": "T",
          "start": 1575
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "NM_000316.2:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000307.1:p.Ile458Lys",
        "hgvsWellDefined": "NP_000307.1:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006380"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2499241344",
      "coordinates": [
        {
          "allele": "A",
          "end": 1439,
          "referenceAllele": "T",
          "start": 1438
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "NM_001184744.1:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001171673.1:p.Ile458Lys",
        "hgvsWellDefined": "NP_001171673.1:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS015949"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1393,
          "referenceAllele": "T",
          "start": 1392
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_005265344.2:c.1280T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005265401.1:p.Ile427Lys",
        "hgvsWellDefined": "XP_005265401.1:p.Ile427Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS064588"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1644,
          "referenceAllele": "T",
          "start": 1643
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_011533967.1:c.1412T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011532269.1:p.Ile471Lys",
        "hgvsWellDefined": "XP_011532269.1:p.Ile471Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS100985"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1515,
          "referenceAllele": "T",
          "start": 1514
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_011533968.1:c.1394T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011532270.1:p.Ile465Lys",
        "hgvsWellDefined": "XP_011532270.1:p.Ile465Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS100986"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3373,
          "referenceAllele": "T",
          "start": 3372
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_005265344.3:c.1280T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005265401.1:p.Ile427Lys",
        "hgvsWellDefined": "XP_005265401.1:p.Ile427Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS536036"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1672,
          "referenceAllele": "T",
          "start": 1671
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_011533967.3:c.1412T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011532269.1:p.Ile471Lys",
        "hgvsWellDefined": "XP_011532269.1:p.Ile471Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS551445"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1518,
          "referenceAllele": "T",
          "start": 1517
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_011533968.2:c.1394T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011532270.1:p.Ile465Lys",
        "hgvsWellDefined": "XP_011532270.1:p.Ile465Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS551446"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1624,
          "referenceAllele": "T",
          "start": 1623
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_017006932.2:c.1412T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016862421.1:p.Ile471Lys",
        "hgvsWellDefined": "XP_016862421.1:p.Ile471Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS561821"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1725,
          "referenceAllele": "T",
          "start": 1724
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_017006933.1:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016862422.1:p.Ile458Lys",
        "hgvsWellDefined": "XP_016862422.1:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS561822"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1637,
          "referenceAllele": "T",
          "start": 1636
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "XM_017006934.1:c.1408T>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016862423.1:p.Tyr470Asn",
        "hgvsWellDefined": "XP_016862423.1:p.Tyr470Asn"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS561823"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825119516",
      "coordinates": [
        {
          "allele": "A",
          "end": 1601,
          "referenceAllele": "T",
          "start": 1600
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009608",
      "geneNCBI_id": 5745,
      "geneSymbol": "PTH1R",
      "hgvs": [
        "NM_000316.3:c.1373T>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000307.1:p.Ile458Lys",
        "hgvsWellDefined": "NP_000307.1:p.Ile458Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662399",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000449590.6:c.1373T>A"
          },
          "RefSeq": {
            "hgvs": "NM_000316.3:c.1373T>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000402723.1:p.Ile458Lys"
          },
          "RefSeq": {
            "hgvs": "NP_000307.1:p.Ile458Lys"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}