{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA341679",
  "communityStandardTitle": [
    "NM_000334.4(SCN4A):c.4483A>T (p.Ile1495Phe)"
  ],
  "externalRecords": {
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr17:g.62019159T>A?assembly=hg19",
        "id": "chr17:g.62019159T>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr17:g.63941799T>A?assembly=hg38",
        "id": "chr17:g.63941799T>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/80338961",
        "rs": 80338961
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "A",
          "end": 63941799,
          "referenceAllele": "T",
          "start": 63941798
        }
      ],
      "hgvs": [
        "NC_000017.11:g.63941799T>A",
        "CM000679.2:g.63941799T>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000065"
    },
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "A",
          "end": 62019159,
          "referenceAllele": "T",
          "start": 62019158
        }
      ],
      "hgvs": [
        "NC_000017.10:g.62019159T>A",
        "CM000679.1:g.62019159T>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000041"
    },
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "A",
          "end": 59372891,
          "referenceAllele": "T",
          "start": 59372890
        }
      ],
      "hgvs": [
        "NC_000017.9:g.59372891T>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000017"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 36120,
          "referenceAllele": "A",
          "start": 36119
        }
      ],
      "hgvs": [
        "NG_011699.1:g.36120A>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001908"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 4560,
          "referenceAllele": "A",
          "start": 4559
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010591",
      "geneNCBI_id": 6329,
      "geneSymbol": "SCN4A",
      "hgvs": [
        "ENST00000435607.3:c.4483A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000396320.1:p.Ile1495Phe",
        "hgvsWellDefined": "ENSP00000396320.1:p.Ile1495Phe"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS293592",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000435607.3:c.4483A>T"
          },
          "RefSeq": {
            "hgvs": "NM_000334.4:c.4483A>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000396320.1:p.Ile1495Phe"
          },
          "RefSeq": {
            "hgvs": "NP_000325.4:p.Ile1495Phe"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 4560,
          "referenceAllele": "A",
          "start": 4559
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010591",
      "geneNCBI_id": 6329,
      "geneSymbol": "SCN4A",
      "hgvs": [
        "ENST00000578147.5:c.4483A>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000463963.1:p.Ile1495Phe",
        "hgvsWellDefined": "ENSP00000463963.1:p.Ile1495Phe"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS385208"
    },
    {
      "@id": "http://reg.genome.network/allele/PA341680",
      "coordinates": [
        {
          "allele": "T",
          "end": 4560,
          "referenceAllele": "A",
          "start": 4559
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010591",
      "geneNCBI_id": 6329,
      "geneSymbol": "SCN4A",
      "hgvs": [
        "NM_000334.4:c.4483A>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_000325.4:p.Ile1495Phe",
        "hgvsWellDefined": "NP_000325.4:p.Ile1495Phe"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006397",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000435607.3:c.4483A>T"
          },
          "RefSeq": {
            "hgvs": "NM_000334.4:c.4483A>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000396320.1:p.Ile1495Phe"
          },
          "RefSeq": {
            "hgvs": "NP_000325.4:p.Ile1495Phe"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5655,
          "referenceAllele": "A",
          "start": 5654
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010591",
      "geneNCBI_id": 6329,
      "geneSymbol": "SCN4A",
      "hgvs": [
        "XM_005257566.3:c.4483A>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_005257623.1:p.Ile1495Phe",
        "hgvsWellDefined": "XP_005257623.1:p.Ile1495Phe"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS061757"
    }
  ],
  "type": "nucleotide"
}