{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA340729807",
  "communityStandardTitle": [
    "NM_144701.3(IL23R):c.1829C>T (p.Thr610Ile)"
  ],
  "externalRecords": {
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.67724750C>T?assembly=hg19",
        "id": "chr1:g.67724750C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.67259067C>T?assembly=hg38",
        "id": "chr1:g.67259067C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/2525563658",
        "rs": 2525563658
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-67259067-C-T?dataset=gnomad_r4",
        "id": "1-67259067-C-T",
        "variant": "1:67259067 C / T"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "T",
          "end": 67259067,
          "referenceAllele": "C",
          "start": 67259066
        }
      ],
      "hgvs": [
        "NC_000001.11:g.67259067C>T",
        "CM000663.2:g.67259067C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000049"
    },
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "T",
          "end": 67724750,
          "referenceAllele": "C",
          "start": 67724749
        }
      ],
      "hgvs": [
        "NC_000001.10:g.67724750C>T",
        "CM000663.1:g.67724750C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000025"
    },
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "T",
          "end": 67497338,
          "referenceAllele": "C",
          "start": 67497337
        }
      ],
      "hgvs": [
        "NC_000001.9:g.67497338C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000001"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 97582,
          "referenceAllele": "C",
          "start": 97581
        }
      ],
      "hgvs": [
        "NG_011498.1:g.97582C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001766"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1668,
          "referenceAllele": "C",
          "start": 1667
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000697149.1:c.1668C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513138.1:n.1668C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908554"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1726,
          "referenceAllele": "C",
          "start": 1725
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000697150.1:c.1726C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513139.1:n.1726C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908555"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1659,
          "referenceAllele": "C",
          "start": 1658
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000697151.1:c.1659C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513140.1:n.1659C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908556"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1739,
          "referenceAllele": "C",
          "start": 1738
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000697164.1:c.1739C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513153.1:p.Thr580Ile",
        "hgvsWellDefined": "ENSP00000513153.1:p.Thr580Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908569"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1526,
          "referenceAllele": "C",
          "start": 1525
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000697165.1:c.1526C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513154.1:p.Thr509Ile",
        "hgvsWellDefined": "ENSP00000513154.1:p.Thr509Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908570"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1946,
          "referenceAllele": "C",
          "start": 1945
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000347310.10:c.1829C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000321345.5:p.Thr610Ile",
        "hgvsWellDefined": "ENSP00000321345.5:p.Thr610Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS748335",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000347310.10:c.1829C>T"
          },
          "RefSeq": {
            "hgvs": "NM_144701.3:c.1829C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000321345.5:p.Thr610Ile"
          },
          "RefSeq": {
            "hgvs": "NP_653302.2:p.Thr610Ile"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2108,
          "referenceAllele": "C",
          "start": 2107
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000637002.1:c.1220C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000490340.1:p.Thr407Ile",
        "hgvsWellDefined": "ENSP00000490340.1:p.Thr407Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS763538"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2000,
          "referenceAllele": "C",
          "start": 1999
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000347310.9:c.1829C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000321345.5:p.Thr610Ile",
        "hgvsWellDefined": "ENSP00000321345.5:p.Thr610Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS262348"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 855,
          "referenceAllele": "C",
          "start": 854
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000395227.2:c.623C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000378652.2:p.Thr208Ile",
        "hgvsWellDefined": "ENSP00000378652.2:p.Thr208Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS276583"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1114,
          "referenceAllele": "C",
          "start": 1113
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000425614.3:c.1064C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000387640.2:p.Thr355Ile",
        "hgvsWellDefined": "ENSP00000387640.2:p.Thr355Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS288838"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 899,
          "referenceAllele": "C",
          "start": 898
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "ENST00000473881.2:c.*655C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000486667.1:n.*655C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS315520"
    },
    {
      "@id": "http://reg.genome.network/allele/PA3066244199",
      "coordinates": [
        {
          "allele": "T",
          "end": 1914,
          "referenceAllele": "C",
          "start": 1913
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "NM_144701.2:c.1829C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_653302.2:p.Thr610Ile",
        "hgvsWellDefined": "NP_653302.2:p.Thr610Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS041217"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1560,
          "referenceAllele": "C",
          "start": 1559
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "XM_005270516.2:c.1067C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_005270573.1:p.Thr356Ile",
        "hgvsWellDefined": "XP_005270573.1:p.Thr356Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS066559"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2443,
          "referenceAllele": "C",
          "start": 2442
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "XM_011540789.1:c.1919C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011539091.1:p.Thr640Ile",
        "hgvsWellDefined": "XP_011539091.1:p.Thr640Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS107733"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2380,
          "referenceAllele": "C",
          "start": 2379
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "XM_011540790.1:c.1829C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011539092.1:p.Thr610Ile",
        "hgvsWellDefined": "XP_011539092.1:p.Thr610Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS107734"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1899,
          "referenceAllele": "C",
          "start": 1898
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "XM_011540791.1:c.1829C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011539093.1:p.Thr610Ile",
        "hgvsWellDefined": "XP_011539093.1:p.Thr610Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS107735"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2381,
          "referenceAllele": "C",
          "start": 2380
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "XM_011540790.3:c.1829C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011539092.1:p.Thr610Ile",
        "hgvsWellDefined": "XP_011539092.1:p.Thr610Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS554170"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1899,
          "referenceAllele": "C",
          "start": 1898
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "XM_011540791.3:c.1829C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011539093.1:p.Thr610Ile",
        "hgvsWellDefined": "XP_011539093.1:p.Thr610Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS554171"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1909,
          "referenceAllele": "C",
          "start": 1908
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "XR_001736993.1:n.1909C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS587830"
    },
    {
      "@id": "http://reg.genome.network/allele/PA3066244199",
      "coordinates": [
        {
          "allele": "T",
          "end": 1946,
          "referenceAllele": "C",
          "start": 1945
        }
      ],
      "gene": "http://reg.genome.network/gene/GN019100",
      "geneNCBI_id": 149233,
      "geneSymbol": "IL23R",
      "hgvs": [
        "NM_144701.3:c.1829C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_653302.2:p.Thr610Ile",
        "hgvsWellDefined": "NP_653302.2:p.Thr610Ile"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS699932",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000347310.10:c.1829C>T"
          },
          "RefSeq": {
            "hgvs": "NM_144701.3:c.1829C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000321345.5:p.Thr610Ile"
          },
          "RefSeq": {
            "hgvs": "NP_653302.2:p.Thr610Ile"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}