{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA337722334",
  "communityStandardTitle": [
    "NM_004660.5(DDX3Y):c.*844C>T"
  ],
  "externalRecords": {
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrY:g.15030878C>T?assembly=hg19",
        "id": "chrY:g.15030878C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrY:g.12918966C>T?assembly=hg38",
        "id": "chrY:g.12918966C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/13447375",
        "rs": 13447375
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "T",
          "end": 12918966,
          "referenceAllele": "C",
          "start": 12918965
        }
      ],
      "hgvs": [
        "NC_000024.10:g.12918966C>T",
        "CM000686.2:g.12918966C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000072"
    },
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "T",
          "end": 15030878,
          "referenceAllele": "C",
          "start": 15030877
        }
      ],
      "hgvs": [
        "NC_000024.9:g.15030878C>T",
        "CM000686.1:g.15030878C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000048"
    },
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "T",
          "end": 13540272,
          "referenceAllele": "C",
          "start": 13540271
        }
      ],
      "hgvs": [
        "NC_000024.8:g.13540272C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000024"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 19860,
          "referenceAllele": "C",
          "start": 19859
        }
      ],
      "hgvs": [
        "NG_012831.1:g.19860C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS002564"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2896,
          "referenceAllele": "C",
          "start": 2895
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "ENST00000336079.8:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000336725.3:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS747547",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000336079.8:c.*844C>T"
          },
          "RefSeq": {
            "hgvs": "NM_004660.5:c.*844C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000336725.3:n.*844C>T"
          },
          "RefSeq": {
            "hgvs": "NP_004651.2:n.*844C>T"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2933,
          "referenceAllele": "C",
          "start": 2932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "ENST00000336079.7:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000336725.3:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS260242"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2978,
          "referenceAllele": "C",
          "start": 2977
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NM_004660.4:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_004651.2:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029812"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2872,
          "referenceAllele": "C",
          "start": 2871
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "XM_006724878.1:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_006724941.1:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS075757"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3245,
          "referenceAllele": "C",
          "start": 3244
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NM_001122665.3:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001116137.1:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS511380"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2893,
          "referenceAllele": "C",
          "start": 2892
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NM_001302552.2:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001289481.1:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS512329"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2909,
          "referenceAllele": "C",
          "start": 2908
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NM_001324195.1:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001311124.1:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS515806"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3296,
          "referenceAllele": "C",
          "start": 3295
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136716.1:n.3296C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528991"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3058,
          "referenceAllele": "C",
          "start": 3057
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136717.1:n.3058C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528992"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3376,
          "referenceAllele": "C",
          "start": 3375
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136718.1:n.3376C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528993"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3166,
          "referenceAllele": "C",
          "start": 3165
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136719.1:n.3166C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528994"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3227,
          "referenceAllele": "C",
          "start": 3226
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136720.1:n.3227C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528995"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2889,
          "referenceAllele": "C",
          "start": 2888
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136721.1:n.2889C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528996"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2973,
          "referenceAllele": "C",
          "start": 2972
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136722.1:n.2973C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528997"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3291,
          "referenceAllele": "C",
          "start": 3290
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136723.1:n.3291C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528998"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3211,
          "referenceAllele": "C",
          "start": 3210
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136724.1:n.3211C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS528999"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2991,
          "referenceAllele": "C",
          "start": 2990
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "XR_001756014.2:n.2991C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601618"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2896,
          "referenceAllele": "C",
          "start": 2895
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NM_004660.5:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_004651.2:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS666588",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000336079.8:c.*844C>T"
          },
          "RefSeq": {
            "hgvs": "NM_004660.5:c.*844C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000336725.3:n.*844C>T"
          },
          "RefSeq": {
            "hgvs": "NP_004651.2:n.*844C>T"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2877,
          "referenceAllele": "C",
          "start": 2876
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NM_001302552.3:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001289481.1:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS716991"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2827,
          "referenceAllele": "C",
          "start": 2826
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NM_001324195.2:c.*844C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001311124.1:n.*844C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS718444"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3214,
          "referenceAllele": "C",
          "start": 3213
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136716.2:n.3214C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS731033"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2976,
          "referenceAllele": "C",
          "start": 2975
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136717.2:n.2976C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS731034"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3294,
          "referenceAllele": "C",
          "start": 3293
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136718.2:n.3294C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS731035"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3084,
          "referenceAllele": "C",
          "start": 3083
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136719.2:n.3084C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS731036"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3145,
          "referenceAllele": "C",
          "start": 3144
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136720.2:n.3145C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS731037"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2879,
          "referenceAllele": "C",
          "start": 2878
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002699",
      "geneNCBI_id": 8653,
      "geneSymbol": "DDX3Y",
      "hgvs": [
        "NR_136721.2:n.2879C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS731038"
    }
  ],
  "type": "nucleotide"
}