{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA337718757",
  "communityStandardTitle": [
    "NM_004654.4(USP9Y):c.-388T>C"
  ],
  "externalRecords": {
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrY:g.14813717T>C?assembly=hg19",
        "id": "chrY:g.14813717T>C"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrY:g.12701788T>C?assembly=hg38",
        "id": "chrY:g.12701788T>C"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/2032594",
        "rs": 2032594
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "C",
          "end": 12701788,
          "referenceAllele": "T",
          "start": 12701787
        }
      ],
      "hgvs": [
        "NC_000024.10:g.12701788T>C",
        "CM000686.2:g.12701788T>C"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000072"
    },
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "C",
          "end": 14813717,
          "referenceAllele": "T",
          "start": 14813716
        }
      ],
      "hgvs": [
        "NC_000024.9:g.14813717T>C",
        "CM000686.1:g.14813717T>C"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000048"
    },
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "C",
          "end": 13323111,
          "referenceAllele": "T",
          "start": 13323110
        }
      ],
      "hgvs": [
        "NC_000024.8:g.13323111T>C"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000024"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 5558,
          "referenceAllele": "T",
          "start": 5557
        }
      ],
      "hgvs": [
        "NG_008311.1:g.5558T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001020"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1261,
          "endIntronDirection": "-",
          "endIntronOffset": 221,
          "referenceAllele": "T",
          "start": 1261,
          "startIntronDirection": "-",
          "startIntronOffset": 222
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "ENST00000457658.6:n.1262-222T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS756603"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 480,
          "endIntronDirection": "-",
          "endIntronOffset": 221,
          "referenceAllele": "T",
          "start": 480,
          "startIntronDirection": "-",
          "startIntronOffset": 222
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "ENST00000651177.1:c.-106-222T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000498372.1:n.-106-222T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS771510"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 558,
          "referenceAllele": "T",
          "start": 557
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "ENST00000338981.7:c.-388T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000342812.3:n.-388T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS260776",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000338981.7:c.-388T>C"
          },
          "RefSeq": {
            "hgvs": "NM_004654.4:c.-388T>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000342812.3:n.-388T>C"
          },
          "RefSeq": {
            "hgvs": "NP_004645.2:n.-388T>C"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 558,
          "referenceAllele": "T",
          "start": 557
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "NM_004654.3:c.-388T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_004645.2:n.-388T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029807"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 558,
          "referenceAllele": "T",
          "start": 557
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "NM_004654.4:c.-388T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_004645.2:n.-388T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696203",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000338981.7:c.-388T>C"
          },
          "RefSeq": {
            "hgvs": "NM_004654.4:c.-388T>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000342812.3:n.-388T>C"
          },
          "RefSeq": {
            "hgvs": "NP_004645.2:n.-388T>C"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}