{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA3165077",
  "communityStandardTitle": [
    "NM_005245.4(FAT1):c.11497A>G (p.Thr3833Ala)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=1301442[alleleid]",
        "alleleId": 1301442,
        "preferredName": "NM_005245.4(FAT1):c.11497A>G (p.Thr3833Ala)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/1310738",
        "RCV": [
          "RCV001767852",
          "RCV004552007"
        ],
        "variationId": 1310738
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/4-187522566-T-C",
        "id": "4-187522566-T-C",
        "variant": "4:187522566 T / C"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr4:g.187522566T>C?assembly=hg19",
        "id": "chr4:g.187522566T>C"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr4:g.186601412T>C?assembly=hg38",
        "id": "chr4:g.186601412T>C"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/201279606",
        "rs": 201279606
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/4-187522566-T-C?dataset=gnomad_r2_1",
        "id": "4-187522566-T-C",
        "variant": "4:187522566 T / C"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/4-186601412-T-C?dataset=gnomad_r3",
        "id": "4-186601412-T-C",
        "variant": "4:186601412 T / C"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/4-186601412-T-C?dataset=gnomad_r4",
        "id": "4-186601412-T-C",
        "variant": "4:186601412 T / C"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "4",
      "coordinates": [
        {
          "allele": "C",
          "end": 186601412,
          "referenceAllele": "T",
          "start": 186601411
        }
      ],
      "hgvs": [
        "NC_000004.12:g.186601412T>C",
        "CM000666.2:g.186601412T>C"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000052"
    },
    {
      "chromosome": "4",
      "coordinates": [
        {
          "allele": "C",
          "end": 187522566,
          "referenceAllele": "T",
          "start": 187522565
        }
      ],
      "hgvs": [
        "NC_000004.11:g.187522566T>C",
        "CM000666.1:g.187522566T>C"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000028"
    },
    {
      "chromosome": "4",
      "coordinates": [
        {
          "allele": "C",
          "end": 187759560,
          "referenceAllele": "T",
          "start": 187759559
        }
      ],
      "hgvs": [
        "NC_000004.10:g.187759560T>C"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000004"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 130504,
          "referenceAllele": "A",
          "start": 130503
        }
      ],
      "hgvs": [
        "NG_046994.1:g.130504A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS616529"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11708,
          "referenceAllele": "A",
          "start": 11707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "ENST00000441802.7:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000406229.2:p.Thr3833Ala",
        "hgvsWellDefined": "ENSP00000406229.2:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS755870",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000441802.7:c.11497A>G"
          },
          "RefSeq": {
            "hgvs": "NM_005245.4:c.11497A>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000406229.2:p.Thr3833Ala"
          },
          "RefSeq": {
            "hgvs": "NP_005236.2:p.Thr3833Ala"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11707,
          "referenceAllele": "A",
          "start": 11706
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "ENST00000441802.6:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000406229.2:p.Thr3833Ala",
        "hgvsWellDefined": "ENSP00000406229.2:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS296574"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 289,
          "referenceAllele": "A",
          "start": 288
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "ENST00000503253.1:n.289A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS335613"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11691,
          "referenceAllele": "A",
          "start": 11690
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "ENST00000614102.4:c.11503A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000479573.1:p.Thr3835Ala",
        "hgvsWellDefined": "ENSP00000479573.1:p.Thr3835Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS402031"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2573086955",
      "coordinates": [
        {
          "allele": "G",
          "end": 11685,
          "referenceAllele": "A",
          "start": 11684
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "NM_005245.3:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_005236.2:p.Thr3833Ala",
        "hgvsWellDefined": "NP_005236.2:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS030356"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 12077,
          "referenceAllele": "A",
          "start": 12076
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "XM_005262834.2:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_005262891.1:p.Thr3833Ala",
        "hgvsWellDefined": "XP_005262891.1:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS063587"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11707,
          "referenceAllele": "A",
          "start": 11706
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "XM_005262835.1:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_005262892.1:p.Thr3833Ala",
        "hgvsWellDefined": "XP_005262892.1:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS063588"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 12077,
          "referenceAllele": "A",
          "start": 12076
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "XM_006714139.2:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_006714202.1:p.Thr3833Ala",
        "hgvsWellDefined": "XP_006714202.1:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS070516"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11858,
          "referenceAllele": "A",
          "start": 11857
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "XM_005262834.3:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_005262891.1:p.Thr3833Ala",
        "hgvsWellDefined": "XP_005262891.1:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS535557"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11702,
          "referenceAllele": "A",
          "start": 11701
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "XM_005262835.2:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_005262892.1:p.Thr3833Ala",
        "hgvsWellDefined": "XP_005262892.1:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS535558"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11858,
          "referenceAllele": "A",
          "start": 11857
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "XM_006714139.3:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_006714202.1:p.Thr3833Ala",
        "hgvsWellDefined": "XP_006714202.1:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS538667"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2573086955",
      "coordinates": [
        {
          "allele": "G",
          "end": 11708,
          "referenceAllele": "A",
          "start": 11707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN003595",
      "geneNCBI_id": 2195,
      "geneSymbol": "FAT1",
      "hgvs": [
        "NM_005245.4:c.11497A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_005236.2:p.Thr3833Ala",
        "hgvsWellDefined": "NP_005236.2:p.Thr3833Ala"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS666882",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000441802.7:c.11497A>G"
          },
          "RefSeq": {
            "hgvs": "NM_005245.4:c.11497A>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000406229.2:p.Thr3833Ala"
          },
          "RefSeq": {
            "hgvs": "NP_005236.2:p.Thr3833Ala"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}