{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA27704961",
  "communityStandardTitle": [
    "NM_001854.4(COL11A1):c.2513G>A (p.Gly838Glu)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=1206753[alleleid]",
        "alleleId": 1206753,
        "preferredName": "NM_001854.4(COL11A1):c.2513G>A (p.Gly838Glu)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/1216773",
        "RCV": [
          "RCV001587154",
          "RCV001825009"
        ],
        "variationId": 1216773
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.103449737C>T?assembly=hg19",
        "id": "chr1:g.103449737C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.102984181C>T?assembly=hg38",
        "id": "chr1:g.102984181C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/372419698",
        "rs": 372419698
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-103449737-C-T?dataset=gnomad_r2_1",
        "id": "1-103449737-C-T",
        "variant": "1:103449737 C / T"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-102984181-C-T?dataset=gnomad_r3",
        "id": "1-102984181-C-T",
        "variant": "1:102984181 C / T"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-102984181-C-T?dataset=gnomad_r4",
        "id": "1-102984181-C-T",
        "variant": "1:102984181 C / T"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "T",
          "end": 102984181,
          "referenceAllele": "C",
          "start": 102984180
        }
      ],
      "hgvs": [
        "NC_000001.11:g.102984181C>T",
        "CM000663.2:g.102984181C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000049"
    },
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "T",
          "end": 103449737,
          "referenceAllele": "C",
          "start": 103449736
        }
      ],
      "hgvs": [
        "NC_000001.10:g.103449737C>T",
        "CM000663.1:g.103449737C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000025"
    },
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "T",
          "end": 103222325,
          "referenceAllele": "C",
          "start": 103222324
        }
      ],
      "hgvs": [
        "NC_000001.9:g.103222325C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000001"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 129316,
          "referenceAllele": "G",
          "start": 129315
        }
      ],
      "hgvs": [
        "NG_008033.1:g.129316G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000790"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 129316,
          "referenceAllele": "G",
          "start": 129315
        }
      ],
      "hgvs": [
        "NG_008033.2:g.129316G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS673484"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2857,
          "referenceAllele": "G",
          "start": 2856
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "ENST00000370096.9:c.2513G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000359114.3:p.Gly838Glu",
        "hgvsWellDefined": "ENSP00000359114.3:p.Gly838Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS750540",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000370096.9:c.2513G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001854.4:c.2513G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000359114.3:p.Gly838Glu"
          },
          "RefSeq": {
            "hgvs": "NP_001845.3:p.Gly838Glu"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2714,
          "referenceAllele": "G",
          "start": 2713
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "ENST00000353414.8:c.2396G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000302551.6:p.Gly799Glu",
        "hgvsWellDefined": "ENSP00000302551.6:p.Gly799Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS262967"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2867,
          "referenceAllele": "G",
          "start": 2866
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "ENST00000358392.6:c.2549G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000351163.2:p.Gly850Glu",
        "hgvsWellDefined": "ENSP00000351163.2:p.Gly850Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS264435"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2826,
          "referenceAllele": "G",
          "start": 2825
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "ENST00000370096.7:c.2513G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000359114.3:p.Gly838Glu",
        "hgvsWellDefined": "ENSP00000359114.3:p.Gly838Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS267871"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2466,
          "referenceAllele": "G",
          "start": 2465
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "ENST00000512756.5:c.2165G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000426533.1:p.Gly722Glu",
        "hgvsWellDefined": "ENSP00000426533.1:p.Gly722Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS342674"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1831,
          "referenceAllele": "G",
          "start": 1830
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "ENST00000635193.1:c.1831G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS408062"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2826161723",
      "coordinates": [
        {
          "allele": "A",
          "end": 2714,
          "referenceAllele": "G",
          "start": 2713
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NM_001190709.1:c.2396G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001177638.1:p.Gly799Glu",
        "hgvsWellDefined": "NP_001177638.1:p.Gly799Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS016206"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829347280",
      "coordinates": [
        {
          "allele": "A",
          "end": 2831,
          "referenceAllele": "G",
          "start": 2830
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NM_001854.3:c.2513G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001845.3:p.Gly838Glu",
        "hgvsWellDefined": "NP_001845.3:p.Gly838Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS027182"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2499295838",
      "coordinates": [
        {
          "allele": "A",
          "end": 2867,
          "referenceAllele": "G",
          "start": 2866
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NM_080629.2:c.2549G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_542196.2:p.Gly850Glu",
        "hgvsWellDefined": "NP_542196.2:p.Gly850Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS040206"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830121646",
      "coordinates": [
        {
          "allele": "A",
          "end": 2483,
          "referenceAllele": "G",
          "start": 2482
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NM_080630.3:c.2165G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_542197.3:p.Gly722Glu",
        "hgvsWellDefined": "NP_542197.3:p.Gly722Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS040207"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2910,
          "referenceAllele": "G",
          "start": 2909
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "XM_011540719.1:c.2513G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011539021.1:p.Gly838Glu",
        "hgvsWellDefined": "XP_011539021.1:p.Gly838Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS107663"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 914,
          "referenceAllele": "G",
          "start": 913
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "XM_011540720.1:c.746G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011539022.1:p.Gly249Glu",
        "hgvsWellDefined": "XP_011539022.1:p.Gly249Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS107664"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1831,
          "referenceAllele": "G",
          "start": 1830
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "XM_011540721.1:c.85G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011539023.1:p.Glu29Lys",
        "hgvsWellDefined": "XP_011539023.1:p.Glu29Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS107665"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2911,
          "referenceAllele": "G",
          "start": 2910
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "XR_946545.1:n.2911G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS140129"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2831,
          "referenceAllele": "G",
          "start": 2830
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NR_134980.1:n.2831G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS527909"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3067,
          "referenceAllele": "G",
          "start": 3066
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "XM_017000334.1:c.2666G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016855823.1:p.Gly889Glu",
        "hgvsWellDefined": "XP_016855823.1:p.Gly889Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556713"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3061,
          "referenceAllele": "G",
          "start": 3060
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "XM_017000335.1:c.2660G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016855824.1:p.Gly887Glu",
        "hgvsWellDefined": "XP_016855824.1:p.Gly887Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556714"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3068,
          "referenceAllele": "G",
          "start": 3067
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "XM_017000336.1:c.2666G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016855825.1:p.Gly889Glu",
        "hgvsWellDefined": "XP_016855825.1:p.Gly889Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556715"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1545,
          "referenceAllele": "G",
          "start": 1544
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "XM_017000337.1:c.1064G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016855826.1:p.Gly355Glu",
        "hgvsWellDefined": "XP_016855826.1:p.Gly355Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556716"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829347280",
      "coordinates": [
        {
          "allele": "A",
          "end": 2857,
          "referenceAllele": "G",
          "start": 2856
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NM_001854.4:c.2513G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001845.3:p.Gly838Glu",
        "hgvsWellDefined": "NP_001845.3:p.Gly838Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS665209",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000370096.9:c.2513G>A"
          },
          "RefSeq": {
            "hgvs": "NM_001854.4:c.2513G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000359114.3:p.Gly838Glu"
          },
          "RefSeq": {
            "hgvs": "NP_001845.3:p.Gly838Glu"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830121646",
      "coordinates": [
        {
          "allele": "A",
          "end": 2509,
          "referenceAllele": "G",
          "start": 2508
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NM_080630.4:c.2165G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_542197.3:p.Gly722Glu",
        "hgvsWellDefined": "NP_542197.3:p.Gly722Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS699526"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2857,
          "referenceAllele": "G",
          "start": 2856
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NR_134980.2:n.2857G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS703568"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2826161723",
      "coordinates": [
        {
          "allele": "A",
          "end": 2740,
          "referenceAllele": "G",
          "start": 2739
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NM_001190709.2:c.2396G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001177638.1:p.Gly799Glu",
        "hgvsWellDefined": "NP_001177638.1:p.Gly799Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS713672"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2499295838",
      "coordinates": [
        {
          "allele": "A",
          "end": 2893,
          "referenceAllele": "G",
          "start": 2892
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002186",
      "geneNCBI_id": 1301,
      "geneSymbol": "COL11A1",
      "hgvs": [
        "NM_080629.3:c.2549G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_542196.2:p.Gly850Glu",
        "hgvsWellDefined": "NP_542196.2:p.Gly850Glu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS729046"
    }
  ],
  "type": "nucleotide"
}