{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA275040",
  "communityStandardTitle": [
    "NM_004369.4(COL6A3):c.6239G>A (p.Gly2080Asp)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=191907[alleleid]",
        "alleleId": 191907,
        "preferredName": "NM_004369.4(COL6A3):c.6239G>A (p.Gly2080Asp)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/194744",
        "RCV": [
          "RCV000175185",
          "RCV000724747"
        ],
        "variationId": 194744
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr2:g.238268774C>T?assembly=hg19",
        "id": "chr2:g.238268774C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr2:g.237360131C>T?assembly=hg38",
        "id": "chr2:g.237360131C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/794727188",
        "rs": 794727188
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "T",
          "end": 237360131,
          "referenceAllele": "C",
          "start": 237360130
        }
      ],
      "hgvs": [
        "NC_000002.12:g.237360131C>T",
        "CM000664.2:g.237360131C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000050"
    },
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "T",
          "end": 238268774,
          "referenceAllele": "C",
          "start": 238268773
        }
      ],
      "hgvs": [
        "NC_000002.11:g.238268774C>T",
        "CM000664.1:g.238268774C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000026"
    },
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "T",
          "end": 237933513,
          "referenceAllele": "C",
          "start": 237933512
        }
      ],
      "hgvs": [
        "NC_000002.10:g.237933513C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000002"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 59077,
          "referenceAllele": "G",
          "start": 59076
        }
      ],
      "hgvs": [
        "NG_008676.1:g.59077G>A",
        "LRG_473:g.59077G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001161"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 5871,
          "referenceAllele": "G",
          "start": 5870
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "ENST00000353578.9:c.5621G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000315873.4:p.Gly1874Asp",
        "hgvsWellDefined": "ENSP00000315873.4:p.Gly1874Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS824068"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 6481,
          "referenceAllele": "G",
          "start": 6480
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "ENST00000295550.9:c.6239G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000295550.4:p.Gly2080Asp",
        "hgvsWellDefined": "ENSP00000295550.4:p.Gly2080Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS744301",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000295550.9:c.6239G>A"
          },
          "RefSeq": {
            "hgvs": "NM_004369.4:c.6239G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000295550.4:p.Gly2080Asp"
          },
          "RefSeq": {
            "hgvs": "NP_004360.2:p.Gly2080Asp"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 6692,
          "referenceAllele": "G",
          "start": 6691
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "ENST00000295550.8:c.6239G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000295550.4:p.Gly2080Asp",
        "hgvsWellDefined": "ENSP00000295550.4:p.Gly2080Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS254109"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 4644,
          "referenceAllele": "G",
          "start": 4643
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "ENST00000347401.7:c.4418G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000315609.4:p.Gly1473Asp",
        "hgvsWellDefined": "ENSP00000315609.4:p.Gly1473Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS262355"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 5906,
          "referenceAllele": "G",
          "start": 5905
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "ENST00000353578.8:c.5621G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000315873.4:p.Gly1874Asp",
        "hgvsWellDefined": "ENSP00000315873.4:p.Gly1874Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS262979"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 5621,
          "referenceAllele": "G",
          "start": 5620
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "ENST00000409809.5:c.5621G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000386844.1:p.Gly1874Asp",
        "hgvsWellDefined": "ENSP00000386844.1:p.Gly1874Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS281868"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 4644,
          "referenceAllele": "G",
          "start": 4643
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "ENST00000472056.5:c.4418G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000418285.1:p.Gly1473Asp",
        "hgvsWellDefined": "ENSP00000418285.1:p.Gly1473Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS314119"
    },
    {
      "@id": "http://reg.genome.network/allele/PA094171",
      "coordinates": [
        {
          "allele": "A",
          "end": 6524,
          "referenceAllele": "G",
          "start": 6523
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "NM_004369.3:c.6239G>A",
        "LRG_473t1:c.6239G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_004360.2:p.Gly2080Asp",
        "hgvsWellDefined": "NP_004360.2:p.Gly2080Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029533"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830147820",
      "coordinates": [
        {
          "allele": "A",
          "end": 4703,
          "referenceAllele": "G",
          "start": 4702
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "NM_057166.4:c.4418G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_476507.3:p.Gly1473Asp",
        "hgvsWellDefined": "NP_476507.3:p.Gly1473Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS040059"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830150101",
      "coordinates": [
        {
          "allele": "A",
          "end": 5906,
          "referenceAllele": "G",
          "start": 5905
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "NM_057167.3:c.5621G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_476508.2:p.Gly1874Asp",
        "hgvsWellDefined": "NP_476508.2:p.Gly1874Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS040060"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 5881,
          "referenceAllele": "G",
          "start": 5880
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "XM_005246065.1:c.5639G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005246122.1:p.Gly1880Asp",
        "hgvsWellDefined": "XP_005246122.1:p.Gly1880Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS057455"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 5027,
          "referenceAllele": "G",
          "start": 5026
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "XM_005246066.1:c.5018G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005246123.1:p.Gly1673Asp",
        "hgvsWellDefined": "XP_005246123.1:p.Gly1673Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS057456"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 5980,
          "referenceAllele": "G",
          "start": 5979
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "XM_006712253.1:c.5738G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_006712316.1:p.Gly1913Asp",
        "hgvsWellDefined": "XP_006712316.1:p.Gly1913Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS069545"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 6478,
          "referenceAllele": "G",
          "start": 6477
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "XM_011510574.1:c.6236G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011508876.1:p.Gly2079Asp",
        "hgvsWellDefined": "XP_011508876.1:p.Gly2079Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS077837"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 4281,
          "referenceAllele": "G",
          "start": 4280
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "XM_011510575.1:c.3833G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011508877.1:p.Gly1278Asp",
        "hgvsWellDefined": "XP_011508877.1:p.Gly1278Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS077838"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 4743,
          "referenceAllele": "G",
          "start": 4742
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "XM_017003304.1:c.3833G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_016858793.1:p.Gly1278Asp",
        "hgvsWellDefined": "XP_016858793.1:p.Gly1278Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS559074"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 5229,
          "referenceAllele": "G",
          "start": 5228
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "XM_024452684.1:c.5018G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308452.1:p.Gly1673Asp",
        "hgvsWellDefined": "XP_024308452.1:p.Gly1673Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS586075"
    },
    {
      "@id": "http://reg.genome.network/allele/PA094171",
      "coordinates": [
        {
          "allele": "A",
          "end": 6481,
          "referenceAllele": "G",
          "start": 6480
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "NM_004369.4:c.6239G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_004360.2:p.Gly2080Asp",
        "hgvsWellDefined": "NP_004360.2:p.Gly2080Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696119",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000295550.9:c.6239G>A"
          },
          "RefSeq": {
            "hgvs": "NM_004369.4:c.6239G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000295550.4:p.Gly2080Asp"
          },
          "RefSeq": {
            "hgvs": "NP_004360.2:p.Gly2080Asp"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830147820",
      "coordinates": [
        {
          "allele": "A",
          "end": 4660,
          "referenceAllele": "G",
          "start": 4659
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "NM_057166.5:c.4418G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_476507.3:p.Gly1473Asp",
        "hgvsWellDefined": "NP_476507.3:p.Gly1473Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS699474"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2830150101",
      "coordinates": [
        {
          "allele": "A",
          "end": 5863,
          "referenceAllele": "G",
          "start": 5862
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002213",
      "geneNCBI_id": 1293,
      "geneSymbol": "COL6A3",
      "hgvs": [
        "NM_057167.4:c.5621G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_476508.2:p.Gly1874Asp",
        "hgvsWellDefined": "NP_476508.2:p.Gly1874Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS729011"
    }
  ],
  "type": "nucleotide"
}