{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA256006",
  "communityStandardTitle": [
    "NM_004484.4(GPC3):c.1666G>A (p.Gly556Arg)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=26734[alleleid]",
        "alleleId": 26734,
        "preferredName": "NM_004484.4(GPC3):c.1666G>A (p.Gly556Arg)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/11695",
        "RCV": [
          "RCV000012461",
          "RCV002313704"
        ],
        "variationId": 11695
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.132670229C>T?assembly=hg19",
        "id": "chrX:g.132670229C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.133536201C>T?assembly=hg38",
        "id": "chrX:g.133536201C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/267606850",
        "rs": 267606850
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 133536201,
          "referenceAllele": "C",
          "start": 133536200
        }
      ],
      "hgvs": [
        "NC_000023.11:g.133536201C>T",
        "CM000685.2:g.133536201C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 132670229,
          "referenceAllele": "C",
          "start": 132670228
        }
      ],
      "hgvs": [
        "NC_000023.10:g.132670229C>T",
        "CM000685.1:g.132670229C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 132497895,
          "referenceAllele": "C",
          "start": 132497894
        }
      ],
      "hgvs": [
        "NC_000023.9:g.132497895C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 454438,
          "referenceAllele": "G",
          "start": 454437
        }
      ],
      "hgvs": [
        "NG_009286.1:g.454438G>A",
        "LRG_505:g.454438G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001543"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 855,
          "referenceAllele": "G",
          "start": 854
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000406757.3:c.855G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS824589"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 697,
          "referenceAllele": "G",
          "start": 696
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000666673.2:n.697G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS826849"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1786,
          "referenceAllele": "G",
          "start": 1785
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000689310.1:c.1618G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000510438.1:p.Gly540Arg",
        "hgvsWellDefined": "ENSP00000510438.1:p.Gly540Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS832103"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 610,
          "referenceAllele": "G",
          "start": 609
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000692074.1:n.610G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS833530"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 953,
          "referenceAllele": "G",
          "start": 952
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000692084.1:c.953G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS833536"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1811,
          "referenceAllele": "G",
          "start": 1810
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000370818.8:c.1666G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000359854.3:p.Gly556Arg",
        "hgvsWellDefined": "ENSP00000359854.3:p.Gly556Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS750683",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000370818.8:c.1666G>A"
          },
          "RefSeq": {
            "hgvs": "NM_004484.4:c.1666G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000359854.3:p.Gly556Arg"
          },
          "RefSeq": {
            "hgvs": "NP_004475.1:p.Gly556Arg"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1880,
          "referenceAllele": "G",
          "start": 1879
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000394299.7:c.1735G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000377836.2:p.Gly579Arg",
        "hgvsWellDefined": "ENSP00000377836.2:p.Gly579Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS753240"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 544,
          "referenceAllele": "G",
          "start": 543
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000666017.1:n.544G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS772928"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 953,
          "referenceAllele": "G",
          "start": 952
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000666673.1:n.953G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS772951"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 733,
          "referenceAllele": "G",
          "start": 732
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000667662.1:n.733G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS772990"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 732,
          "referenceAllele": "G",
          "start": 731
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000669691.1:n.732G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS773072"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2112,
          "referenceAllele": "G",
          "start": 2111
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000370818.7:c.1666G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000359854.3:p.Gly556Arg",
        "hgvsWellDefined": "ENSP00000359854.3:p.Gly556Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS268264"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1932,
          "referenceAllele": "G",
          "start": 1931
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000394299.6:c.1735G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000377836.2:p.Gly579Arg",
        "hgvsWellDefined": "ENSP00000377836.2:p.Gly579Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS276102"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1504,
          "referenceAllele": "G",
          "start": 1503
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "ENST00000631057.2:c.1504G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000486325.1:p.Gly502Arg",
        "hgvsWellDefined": "ENSP00000486325.1:p.Gly502Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS407469"
    },
    {
      "@id": "http://reg.genome.network/allele/PA915988591",
      "coordinates": [
        {
          "allele": "A",
          "end": 1932,
          "referenceAllele": "G",
          "start": 1931
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "NM_001164617.1:c.1735G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001158089.1:p.Gly579Arg",
        "hgvsWellDefined": "NP_001158089.1:p.Gly579Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS014601"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825996904",
      "coordinates": [
        {
          "allele": "A",
          "end": 1815,
          "referenceAllele": "G",
          "start": 1814
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "NM_001164618.1:c.1618G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001158090.1:p.Gly540Arg",
        "hgvsWellDefined": "NP_001158090.1:p.Gly540Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS014602"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825997519",
      "coordinates": [
        {
          "allele": "A",
          "end": 1701,
          "referenceAllele": "G",
          "start": 1700
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "NM_001164619.1:c.1504G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001158091.1:p.Gly502Arg",
        "hgvsWellDefined": "NP_001158091.1:p.Gly502Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS014603"
    },
    {
      "@id": "http://reg.genome.network/allele/PA256008",
      "coordinates": [
        {
          "allele": "A",
          "end": 1863,
          "referenceAllele": "G",
          "start": 1862
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "NM_004484.3:c.1666G>A",
        "LRG_505t1:c.1666G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_004475.1:p.Gly556Arg",
        "hgvsWellDefined": "NP_004475.1:p.Gly556Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029644"
    },
    {
      "@id": "http://reg.genome.network/allele/PA915988591",
      "coordinates": [
        {
          "allele": "A",
          "end": 1880,
          "referenceAllele": "G",
          "start": 1879
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "NM_001164617.2:c.1735G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001158089.1:p.Gly579Arg",
        "hgvsWellDefined": "NP_001158089.1:p.Gly579Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS678349"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825996904",
      "coordinates": [
        {
          "allele": "A",
          "end": 1763,
          "referenceAllele": "G",
          "start": 1762
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "NM_001164618.2:c.1618G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001158090.1:p.Gly540Arg",
        "hgvsWellDefined": "NP_001158090.1:p.Gly540Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS678350"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825997519",
      "coordinates": [
        {
          "allele": "A",
          "end": 1649,
          "referenceAllele": "G",
          "start": 1648
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "NM_001164619.2:c.1504G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001158091.1:p.Gly502Arg",
        "hgvsWellDefined": "NP_001158091.1:p.Gly502Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS678351"
    },
    {
      "@id": "http://reg.genome.network/allele/PA256008",
      "coordinates": [
        {
          "allele": "A",
          "end": 1811,
          "referenceAllele": "G",
          "start": 1810
        }
      ],
      "gene": "http://reg.genome.network/gene/GN004451",
      "geneNCBI_id": 2719,
      "geneSymbol": "GPC3",
      "hgvs": [
        "NM_004484.4:c.1666G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_004475.1:p.Gly556Arg",
        "hgvsWellDefined": "NP_004475.1:p.Gly556Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696153",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000370818.8:c.1666G>A"
          },
          "RefSeq": {
            "hgvs": "NM_004484.4:c.1666G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000359854.3:p.Gly556Arg"
          },
          "RefSeq": {
            "hgvs": "NP_004475.1:p.Gly556Arg"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}