{ "@context": "http://reg.genome.network/schema/allele.jsonld", "@id": "http://reg.genome.network/allele/CA254648", "communityStandardTitle": [ "NM_002180.3(IGHMBP2):c.121C>T (p.Gln41Ter)" ], "externalRecords": { "ClinVarAlleles": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=24154[alleleid]", "alleleId": 24154, "preferredName": "NM_002180.3(IGHMBP2):c.121C>T (p.Gln41Ter)" } ], "ClinVarVariations": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/9115", "RCV": [ "RCV000009685", "RCV003764542" ], "variationId": 9115 } ], "MyVariantInfo_hg19": [ { "@id": "http://myvariant.info/v1/variant/chr11:g.68673571C>T?assembly=hg19", "id": "chr11:g.68673571C>T" } ], "MyVariantInfo_hg38": [ { "@id": "http://myvariant.info/v1/variant/chr11:g.68906103C>T?assembly=hg38", "id": "chr11:g.68906103C>T" } ], "dbSNP": [ { "@id": "http://www.ncbi.nlm.nih.gov/snp/137852668", "rs": 137852668 } ], "gnomAD_4": [ { "@id": "http://gnomad.broadinstitute.org/variant/11-68906103-C-T?dataset=gnomad_r4", "id": "11-68906103-C-T", "variant": "11:68906103 C / T" } ] }, "genomicAlleles": [ { "chromosome": "11", "coordinates": [ { "allele": "T", "end": 68906103, "referenceAllele": "C", "start": 68906102 } ], "hgvs": [ "NC_000011.10:g.68906103C>T", "CM000673.2:g.68906103C>T" ], "referenceGenome": "GRCh38", "referenceSequence": "http://reg.genome.network/refseq/RS000059" }, { "chromosome": "11", "coordinates": [ { "allele": "T", "end": 68673571, "referenceAllele": "C", "start": 68673570 } ], "hgvs": [ "NC_000011.9:g.68673571C>T", "CM000673.1:g.68673571C>T" ], "referenceGenome": "GRCh37", "referenceSequence": "http://reg.genome.network/refseq/RS000035" }, { "chromosome": "11", "coordinates": [ { "allele": "T", "end": 68430147, "referenceAllele": "C", "start": 68430146 } ], "hgvs": [ "NC_000011.8:g.68430147C>T" ], "referenceGenome": "NCBI36", "referenceSequence": "http://reg.genome.network/refseq/RS000011" }, { "coordinates": [ { "allele": "T", "end": 7253, "referenceAllele": "C", "start": 7252 } ], "hgvs": [ "NG_007976.1:g.7253C>T", "LRG_250:g.7253C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS000744" } ], "transcriptAlleles": [ { "coordinates": [ { "allele": "T", "end": 183, "referenceAllele": "C", "start": 182 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000255078.8:c.121C>T" ], "proteinEffect": { "hgvs": "ENSP00000255078.4:p.Gln41Ter", "hgvsWellDefined": 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}, "referenceSequence": "http://reg.genome.network/refseq/RS741702", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000255078.8:c.121C>T" }, "RefSeq": { "hgvs": "NM_002180.3:c.121C>T" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000255078.4:p.Gln41Ter" }, "RefSeq": { "hgvs": "NP_002171.2:p.Gln41Ter" } } } }, { "coordinates": [ { "allele": "T", "end": 84, "referenceAllele": "C", "start": 83 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000539224.2:c.84C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS759589" }, { "coordinates": [ { "allele": "T", "end": 84, "referenceAllele": "C", "start": 83 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000674583.1:c.84C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS774529" }, { "coordinates": [ { "allele": "T", "end": 35, "referenceAllele": "C", "start": 34 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000674597.1:c.35C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS774542" }, { "coordinates": [ { "allele": "T", "end": 64, "referenceAllele": "C", "start": 63 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000674729.1:n.64C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS774652" }, { "coordinates": [ { "allele": "T", "end": 141, "referenceAllele": "C", "start": 140 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000674955.1:c.121C>T" ], "proteinEffect": { "hgvs": "ENSP00000502463.1:p.Gln41Ter", "hgvsWellDefined": "ENSP00000502463.1:p.Gln41_Gly464delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysAlaLeuIleAlaLeuLysLysTyrHisSerGlyProAlaSerSerLeuIleGluValLeuPheGlyArgSerAlaProSerProAlaSerGluIleHisProLeuThrPhePheAsnThrCysLeuAspThrSerGlnLysGluAlaValLeuPheAlaLeuSerGlnLysGluLeuAlaIleIleHisGlyProProGlyThrGlyLysThrThrThrValValGluIleIleLeuGlnAlaValLysGlnGlyLeuLysValLeuCysCysAlaProSerAsnIleAlaValAspAsnLeuValGluArgLeuAlaLeuCysLysGlnArgIleLeuArgLeuGlyHisProAlaArgLeuLeuGluSerIleGlnGlnHisSerLeuAspAlaValLeuAlaArgSerAspSerAlaGlnIleValAlaAspIleArgLysAspIleAspGlnValPheValLysAsnLysLysThrGlnAspLysArgGluLysSerAsnPheArgAsnGluIleLysLeuLeuArgLysGluLeuLysGluArgGluGluAlaAlaMetLeuGluSerLeuThrSerAlaAsnValValLeuAlaThrAsnThrGlyAlaSerAlaAspGlyProLeuLysLeuLeuProGluSerTyrPheAspValValValIleAspGluCysAlaGlnAlaLeuGluAlaSerCysTrpIleProLeuLeuLysAlaArgLysCysIleLeuAlaGlyAspHisLysGlnLeuProProThrThrValSerHisLysSerTyrGluLeuGlyThrPheValValPheArgGlyProGluGluAspValGlnGluIleLeuSerSerArgIleSerSerGlnGlyArgGlyGlnProArgSerTrpArgGlyCysAlaGlyArgThrValThrGlnProAspGlyThrProGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS774837" }, { "coordinates": [ { "allele": "T", "end": 84, "referenceAllele": "C", "start": 83 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000675142.1:n.84C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS775008" }, { "coordinates": [ { "allele": "T", "end": 35, "referenceAllele": "C", "start": 34 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000675469.1:c.35C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS775288" }, { "coordinates": [ { "allele": "T", "end": 211, "referenceAllele": "C", "start": 210 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000675615.1:c.121C>T" ], "proteinEffect": { "hgvs": "ENSP00000502413.1:p.Gln41Ter", "hgvsWellDefined": "ENSP00000502413.1:p.Gln41_Arg875delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysAlaLeuIleAlaLeuLysLysTyrHisSerGlyProAlaSerSerLeuIleGluValLeuPheGlyArgSerAlaProSerProAlaSerGluIleHisProLeuThrPhePheAsnThrCysLeuAspThrSerGlnLysGluAlaValLeuPheAlaLeuSerGlnLysGluLeuAlaIleIleHisGlyProProGlyThrGlyLysThrThrThrValValGluIleIleLeuGlnAlaValLysGlnGlyLeuLysValLeuCysCysAlaProSerAsnIleAlaValAspAsnLeuValGluArgLeuAlaLeuCysLysGlnArgIleLeuArgLeuGlyHisProAlaArgLeuLeuGluSerIleGlnGlnHisSerLeuAspAlaValLeuAlaArgSerAspSerAlaGlnIleValAlaAspIleArgLysAspIleAspGlnValPheValLysAsnLysLysThrGlnAspLysArgGluLysSerAsnPheArgAsnGluIleLysLeuLeuArgLysGluLeuLysGluArgGluGluAlaAlaMetLeuGluSerLeuThrSerAlaAsnValValLeuAlaThrAsnThrGlyAlaSerAlaAspGlyProLeuLysLeuLeuProGluSerTyrPheAspValValValIleAspGluCysAlaGlnAlaLeuGluAlaSerCysTrpIleProLeuLeuLysAlaArgLysCysIleLeuAlaGlyAspHisLysGlnLeuProProThrThrValSerHisLysAlaAlaLeuAlaGlyLeuSerLeuSerLeuMetGluArgLeuAlaGluGluTyrGlyAlaArgValValArgThrLeuThrValGlnTyrArgMetHisGlnAlaIleMetArgTrpAlaSerAspThrMetTyrLeuGlyGlnLeuThrAlaHisSerSerValAlaArgHisLeuLeuArgAspLeuProGlyValAlaAlaThrGluGluThrGlyValProLeuLeuLeuValAspThrAlaGlyCysGlyLeuPheGluLeuGluGluGluAspGluGlnSerLysGlyAsnProGlyGluValArgLeuValSerLeuHisIleGlnAlaLeuValAspAlaGlyValProAlaArgAspIleAlaValValSerProTyrAsnLeuGlnValAspLeuLeuArgGlnSerLeuValHisArgHisProGluLeuGluIleLysSerValAspGlyPheGlnGlyArgGluLysGluAlaValIleLeuSerPheValArgSerAsnArgLysGlyGluValGlyPheLeuAlaGluAspArgArgIleAsnValAlaValThrArgAlaArgArgHisValAlaValIleCysAspSerArgThrValAsnAsnHisAlaPheLeuLysThrLeuValGluTyrPheThrGlnHisGlyGluValArgThrAlaPheGluTyrLeuAspAspIleValProGluAsnTyrSerHisGluAsnSerGlnGlySerSerHisAlaAlaThrLysProGlnGlyProAlaThrSerThrArgThrGlySerGlnArgGlnGluGlyGlyGlnGluAlaAlaAlaProAlaArgGlnGlyArgLysLysProAlaGlyLysSerLeuAlaSerGluAlaProSerGlnProSerLeuAsnGlyGlySerProGluGlyValGluSerGlnAspGlyValAspHisPheArgAlaMetIleValGluPheMetAlaSerLysLysMetGlnLeuGluPheProProSerLeuAsnSerHisAspArgLeuArgValHisGlnIleAlaGluGluHisGlyLeuArgHisAspSerSerGlyGluGlyLysArgArgPheIleThrValSerLysArgAlaProArgProArgAlaAlaLeuGlyProProAlaGlyThrGlyGlyProAlaProLeuGlnProValProProThrProAlaGlnThrGluGlnProProArgGluGlnArgGlyProAspGlnProAspLeuArgThrLeuHisLeuGluArgLeuGlnArgValArgSerAlaGlnGlyGlnProAlaSerLysGluGlnGlnAlaSerGlyGlnGlnLysLeuProGluLysLysLysLysLysAlaLysAspProTrpLeuArgTer" 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"referenceAllele": "C", "start": 160 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000676173.1:n.161C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS775893" }, { "coordinates": [ { "allele": "T", "end": 211, "referenceAllele": "C", "start": 210 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000676228.1:c.121C>T" ], "proteinEffect": { "hgvs": "ENSP00000502375.1:p.Gln41Ter", "hgvsWellDefined": "ENSP00000502375.1:p.Gln41_Gly192delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysProAlaAspIleLeuGlnHisLeuProGlyHisLeuProGluArgSerGlyPheIleCysAlaValSerGluArgThrCysHisHisProTrpThrSerTrpHisTrpGluAsnHisAspCysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS775942" }, { "coordinates": [ { "allele": "T", "end": 232, "referenceAllele": "C", "start": 231 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000255078.7:c.121C>T" ], "proteinEffect": { "hgvs": "ENSP00000255078.3:p.Gln41Ter", "hgvsWellDefined": "ENSP00000255078.3:p.Gln41_Thr993delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysAlaLeuIleAlaLeuLysLysTyrHisSerGlyProAlaSerSerLeuIleGluValLeuPheGlyArgSerAlaProSerProAlaSerGluIleHisProLeuThrPhePheAsnThrCysLeuAspThrSerGlnLysGluAlaValLeuPheAlaLeuSerGlnLysGluLeuAlaIleIleHisGlyProProGlyThrGlyLysThrThrThrValValGluIleIleLeuGlnAlaValLysGlnGlyLeuLysValLeuCysCysAlaProSerAsnIleAlaValAspAsnLeuValGluArgLeuAlaLeuCysLysGlnArgIleLeuArgLeuGlyHisProAlaArgLeuLeuGluSerIleGlnGlnHisSerLeuAspAlaValLeuAlaArgSerAspSerAlaGlnIleValAlaAspIleArgLysAspIleAspGlnValPheValLysAsnLysLysThrGlnAspLysArgGluLysSerAsnPheArgAsnGluIleLysLeuLeuArgLysGluLeuLysGluArgGluGluAlaAlaMetLeuGluSerLeuThrSerAlaAsnValValLeuAlaThrAsnThrGlyAlaSerAlaAspGlyProLeuLysLeuLeuProGluSerTyrPheAspValValValIleAspGluCysAlaGlnAlaLeuGluAlaSerCysTrpIleProLeuLeuLysAlaArgLysCysIleLeuAlaGlyAspHisLysGlnLeuProProThrThrValSerHisLysAlaAlaLeuAlaGlyLeuSerLeuSerLeuMetGluArgLeuAlaGluGluTyrGlyAlaArgValValArgThrLeuThrValGlnTyrArgMetHisGlnAlaIleMetArgTrpAlaSerAspThrMetTyrLeuGlyGlnLeuThrAlaHisSerSerValAlaArgHisLeuLeuArgAspLeuProGlyValAlaAlaThrGluGluThrGlyValProLeuLeuLeuValAspThrAlaGlyCysGlyLeuPheGluLeuGluGluGluAspGluGlnSerLysGlyAsnProGlyGluValArgLeuValSerLeuHisIleGlnAlaLeuValAspAlaGlyValProAlaArgAspIleAlaValValSerProTyrAsnLeuGlnValAspLeuLeuArgGlnSerLeuValHisArgHisProGluLeuGluIleLysSerValAspGlyPheGlnGlyArgGluLysGluAlaValIleLeuSerPheValArgSerAsnArgLysGlyGluValGlyPheLeuAlaGluAspArgArgIleAsnValAlaValThrArgAlaArgArgHisValAlaValIleCysAspSerArgThrValAsnAsnHisAlaPheLeuLysThrLeuValGluTyrPheThrGlnHisGlyGluValArgThrAlaPheGluTyrLeuAspAspIleValProGluAsnTyrSerHisGluAsnSerGlnGlySerSerHisAlaAlaThrLysProGlnGlyProAlaThrSerThrArgThrGlySerGlnArgGlnGluGlyGlyGlnGluAlaAlaAlaProAlaArgGlnGlyArgLysLysProAlaGlyLysSerLeuAlaSerGluAlaProSerGlnProSerLeuAsnGlyGlySerProGluGlyValGluSerGlnAspGlyValAspHisPheArgAlaMetIleValGluPheMetAlaSerLysLysMetGlnLeuGluPheProProSerLeuAsnSerHisAspArgLeuArgValHisGlnIleAlaGluGluHisGlyLeuArgHisAspSerSerGlyGluGlyLysArgArgPheIleThrValSerLysArgAlaProArgProArgAlaAlaLeuGlyProProAlaGlyThrGlyGlyProAlaProLeuGlnProValProProThrProAlaGlnThrGluGlnProProArgGluGlnArgGlyProAspGlnProAspLeuArgThrLeuHisLeuGluArgLeuGlnArgValArgSerAlaGlnGlyGlnProAlaSerLysGluGlnGlnAlaSerGlyGlnGlnLysLeuProGluLysLysLysLysLysAlaLysGlyHisProAlaThrAspLeuProThrGluGluAspPheGluAlaLeuValSerAlaAlaValLysAlaAspAsnThrCysGlyPheAlaLysCysThrAlaGlyValThrThrLeuGlyGlnPheCysGlnLeuCysSerArgArgTyrCysLeuSerHisHisLeuProGluIleHisGlyCysGlyGluArgAlaArgAlaHisAlaArgGlnArgIleSerArgGluGlyValLeuTyrAlaGlySerGlyThrLysAsnGlySerLeuAspProAlaLysArgAlaGlnLeuGlnArgArgLeuAspLysLysLeuSerGluLeuSerAsnGlnArgThrSerArgArgLysGluArgGlyThrTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS250071" }, { "coordinates": [ { "allele": "T", "end": 177, "referenceAllele": "C", "start": 176 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000539224.1:c.121C>T" ], "proteinEffect": { "hgvs": "ENSP00000440465.1:p.Gln41Ter", "hgvsWellDefined": "ENSP00000440465.1:p.Gln41_Gly192delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysProAlaAspIleLeuGlnHisLeuProGlyHisLeuProGluArgSerGlyPheIleCysAlaValSerGluArgThrCysHisHisProTrpThrSerTrpHisTrpGluAsnHisAspCysGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS361739" }, { "coordinates": [ { "allele": "T", "end": 148, "endIntronDirection": "-", "endIntronOffset": 2041, "referenceAllele": "C", "start": 148, "startIntronDirection": "-", "startIntronOffset": 2042 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000544541.1:c.87-2042C>T" ], "proteinEffect": { "hgvs": "ENSP00000443343.1:n.87-2042C>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS364627" }, { "coordinates": [ { "allele": "T", "end": 148, "referenceAllele": "C", "start": 147 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "ENST00000545146.1:c.121C>T" ], "proteinEffect": { "hgvs": "ENSP00000456366.1:p.Gln41Ter", "hgvsWellDefined": "ENSP00000456366.1:p.Gln41_Thr91delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyValCysValLeuThrTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS364954" }, { "@id": "http://reg.genome.network/allele/PA254650", "coordinates": [ { "allele": "T", "end": 223, "referenceAllele": "C", "start": 222 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "NM_002180.2:c.121C>T", "LRG_250t1:c.121C>T" ], "proteinEffect": { "hgvs": "NP_002171.2:p.Gln41Ter", "hgvsWellDefined": "NP_002171.2:p.Gln41_Thr993delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysAlaLeuIleAlaLeuLysLysTyrHisSerGlyProAlaSerSerLeuIleGluValLeuPheGlyArgSerAlaProSerProAlaSerGluIleHisProLeuThrPhePheAsnThrCysLeuAspThrSerGlnLysGluAlaValLeuPheAlaLeuSerGlnLysGluLeuAlaIleIleHisGlyProProGlyThrGlyLysThrThrThrValValGluIleIleLeuGlnAlaValLysGlnGlyLeuLysValLeuCysCysAlaProSerAsnIleAlaValAspAsnLeuValGluArgLeuAlaLeuCysLysGlnArgIleLeuArgLeuGlyHisProAlaArgLeuLeuGluSerIleGlnGlnHisSerLeuAspAlaValLeuAlaArgSerAspSerAlaGlnIleValAlaAspIleArgLysAspIleAspGlnValPheValLysAsnLysLysThrGlnAspLysArgGluLysSerAsnPheArgAsnGluIleLysLeuLeuArgLysGluLeuLysGluArgGluGluAlaAlaMetLeuGluSerLeuThrSerAlaAsnValValLeuAlaThrAsnThrGlyAlaSerAlaAspGlyProLeuLysLeuLeuProGluSerTyrPheAspValValValIleAspGluCysAlaGlnAlaLeuGluAlaSerCysTrpIleProLeuLeuLysAlaArgLysCysIleLeuAlaGlyAspHisLysGlnLeuProProThrThrValSerHisLysAlaAlaLeuAlaGlyLeuSerLeuSerLeuMetGluArgLeuAlaGluGluTyrGlyAlaArgValValArgThrLeuThrValGlnTyrArgMetHisGlnAlaIleMetArgTrpAlaSerAspThrMetTyrLeuGlyGlnLeuThrAlaHisSerSerValAlaArgHisLeuLeuArgAspLeuProGlyValAlaAlaThrGluGluThrGlyValProLeuLeuLeuValAspThrAlaGlyCysGlyLeuPheGluLeuGluGluGluAspGluGlnSerLysGlyAsnProGlyGluValArgLeuValSerLeuHisIleGlnAlaLeuValAspAlaGlyValProAlaArgAspIleAlaValValSerProTyrAsnLeuGlnValAspLeuLeuArgGlnSerLeuValHisArgHisProGluLeuGluIleLysSerValAspGlyPheGlnGlyArgGluLysGluAlaValIleLeuSerPheValArgSerAsnArgLysGlyGluValGlyPheLeuAlaGluAspArgArgIleAsnValAlaValThrArgAlaArgArgHisValAlaValIleCysAspSerArgThrValAsnAsnHisAlaPheLeuLysThrLeuValGluTyrPheThrGlnHisGlyGluValArgThrAlaPheGluTyrLeuAspAspIleValProGluAsnTyrSerHisGluAsnSerGlnGlySerSerHisAlaAlaThrLysProGlnGlyProAlaThrSerThrArgThrGlySerGlnArgGlnGluGlyGlyGlnGluAlaAlaAlaProAlaArgGlnGlyArgLysLysProAlaGlyLysSerLeuAlaSerGluAlaProSerGlnProSerLeuAsnGlyGlySerProGluGlyValGluSerGlnAspGlyValAspHisPheArgAlaMetIleValGluPheMetAlaSerLysLysMetGlnLeuGluPheProProSerLeuAsnSerHisAspArgLeuArgValHisGlnIleAlaGluGluHisGlyLeuArgHisAspSerSerGlyGluGlyLysArgArgPheIleThrValSerLysArgAlaProArgProArgAlaAlaLeuGlyProProAlaGlyThrGlyGlyProAlaProLeuGlnProValProProThrProAlaGlnThrGluGlnProProArgGluGlnArgGlyProAspGlnProAspLeuArgThrLeuHisLeuGluArgLeuGlnArgValArgSerAlaGlnGlyGlnProAlaSerLysGluGlnGlnAlaSerGlyGlnGlnLysLeuProGluLysLysLysLysLysAlaLysGlyHisProAlaThrAspLeuProThrGluGluAspPheGluAlaLeuValSerAlaAlaValLysAlaAspAsnThrCysGlyPheAlaLysCysThrAlaGlyValThrThrLeuGlyGlnPheCysGlnLeuCysSerArgArgTyrCysLeuSerHisHisLeuProGluIleHisGlyCysGlyGluArgAlaArgAlaHisAlaArgGlnArgIleSerArgGluGlyValLeuTyrAlaGlySerGlyThrLysAsnGlySerLeuAspProAlaLysArgAlaGlnLeuGlnArgArgLeuAspLysLysLeuSerGluLeuSerAsnGlnArgThrSerArgArgLysGluArgGlyThrTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS027500" }, { "coordinates": [ { "allele": "T", "end": 183, "referenceAllele": "C", "start": 182 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "XM_005273974.2:c.-895C>T" ], "proteinEffect": { "hgvs": "XP_005274031.1:n.-895C>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS067782" }, { "coordinates": [ { "allele": "T", "end": 223, "referenceAllele": "C", "start": 222 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "XM_005273976.1:c.121C>T" ], "proteinEffect": { "hgvs": "XP_005274033.1:p.Gln41Ter", "hgvsWellDefined": "XP_005274033.1:p.Gln41_Pro540delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysAlaLeuIleAlaLeuLysLysTyrHisSerGlyProAlaSerSerLeuIleGluValLeuPheGlyArgSerAlaProSerProAlaSerGluIleHisProLeuThrPhePheAsnThrCysLeuAspThrSerGlnLysGluAlaValLeuPheAlaLeuSerGlnLysGluLeuAlaIleIleHisGlyProProGlyThrGlyLysThrThrThrValValGluIleIleLeuGlnAlaValLysGlnGlyLeuLysValLeuCysCysAlaProSerAsnIleAlaValAspAsnLeuValGluArgLeuAlaLeuCysLysGlnArgIleLeuArgLeuGlyHisProAlaArgLeuLeuGluSerIleGlnGlnHisSerLeuAspAlaValLeuAlaArgSerAspSerAlaGlnIleValAlaAspIleArgLysAspIleAspGlnValPheValLysAsnLysLysThrGlnAspLysArgGluLysSerAsnPheArgAsnGluIleLysLeuLeuArgLysGluLeuLysGluArgGluGluAlaAlaMetLeuGluSerLeuThrSerAlaAsnValValLeuAlaThrAsnThrGlyAlaSerAlaAspGlyProLeuLysLeuLeuProGluSerTyrPheAspValValValIleAspGluCysAlaGlnAlaLeuGluAlaSerCysTrpIleProLeuLeuLysAlaArgLysCysIleLeuAlaGlyAspHisLysGlnLeuProProThrThrValSerHisAsnLeuGlnSerValAspThrSerLeuAspGlyGlyHisTrpAlaGluThrGlnGlnThrMetValLeuProCysGlyAspThrGlyAlaLeuMetGlnTrpProGlyProGlyCysProGlyGlyAspThrGlyValLeuMetArgTrpProGlyProGlyCysProGlyGlyAspThrGlyAlaLeuMetGlnTrpProGlyProGlyCysLeuGlyGlyGluSerAlaAlaArgProProSerProProLeuThrSerProHisThrThrGlnHisSerLeuLeuGlnProHisArgProArgTrpProLeuCysLeuAspHisSerCysLeuGlyValAlaGlyValProSerLeuGlnMetAsnProLeuHisGlyIleProTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS067784" }, { "coordinates": [ { "allele": "T", "end": 223, "referenceAllele": "C", "start": 222 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "XR_247198.1:n.223C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS117297" }, { "coordinates": [ { "allele": "T", "end": 223, "referenceAllele": "C", "start": 222 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "XR_949903.1:n.223C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS143242" }, { "coordinates": [ { "allele": "T", "end": 219, "referenceAllele": "C", "start": 218 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "XM_005273976.2:c.121C>T" ], "proteinEffect": { "hgvs": "XP_005274033.1:p.Gln41Ter", "hgvsWellDefined": "XP_005274033.1:p.Gln41_Pro540delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysAlaLeuIleAlaLeuLysLysTyrHisSerGlyProAlaSerSerLeuIleGluValLeuPheGlyArgSerAlaProSerProAlaSerGluIleHisProLeuThrPhePheAsnThrCysLeuAspThrSerGlnLysGluAlaValLeuPheAlaLeuSerGlnLysGluLeuAlaIleIleHisGlyProProGlyThrGlyLysThrThrThrValValGluIleIleLeuGlnAlaValLysGlnGlyLeuLysValLeuCysCysAlaProSerAsnIleAlaValAspAsnLeuValGluArgLeuAlaLeuCysLysGlnArgIleLeuArgLeuGlyHisProAlaArgLeuLeuGluSerIleGlnGlnHisSerLeuAspAlaValLeuAlaArgSerAspSerAlaGlnIleValAlaAspIleArgLysAspIleAspGlnValPheValLysAsnLysLysThrGlnAspLysArgGluLysSerAsnPheArgAsnGluIleLysLeuLeuArgLysGluLeuLysGluArgGluGluAlaAlaMetLeuGluSerLeuThrSerAlaAsnValValLeuAlaThrAsnThrGlyAlaSerAlaAspGlyProLeuLysLeuLeuProGluSerTyrPheAspValValValIleAspGluCysAlaGlnAlaLeuGluAlaSerCysTrpIleProLeuLeuLysAlaArgLysCysIleLeuAlaGlyAspHisLysGlnLeuProProThrThrValSerHisAsnLeuGlnSerValAspThrSerLeuAspGlyGlyHisTrpAlaGluThrGlnGlnThrMetValLeuProCysGlyAspThrGlyAlaLeuMetGlnTrpProGlyProGlyCysProGlyGlyAspThrGlyValLeuMetArgTrpProGlyProGlyCysProGlyGlyAspThrGlyAlaLeuMetGlnTrpProGlyProGlyCysLeuGlyGlyGluSerAlaAlaArgProProSerProProLeuThrSerProHisThrThrGlnHisSerLeuLeuGlnProHisArgProArgTrpProLeuCysLeuAspHisSerCysLeuGlyValAlaGlyValProSerLeuGlnMetAsnProLeuHisGlyIleProTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS537534" }, { "coordinates": [ { "allele": "T", "end": 167, "referenceAllele": "C", "start": 166 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "XM_017017669.2:c.-793C>T" ], "proteinEffect": { "hgvs": "XP_016873158.1:n.-793C>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS569798" }, { "coordinates": [ { "allele": "T", "end": 219, "referenceAllele": "C", "start": 218 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "XM_017017671.2:c.121C>T" ], "proteinEffect": { "hgvs": "XP_016873160.1:p.Gln41Ter", "hgvsWellDefined": "XP_016873160.1:p.Gln41_Pro546delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysAlaLeuIleAlaLeuLysLysTyrHisSerGlyProAlaSerSerLeuIleGluValLeuPheGlyArgSerAlaProSerProAlaSerGluIleHisProLeuThrPhePheAsnThrCysLeuAspThrSerGlnLysGluAlaValLeuPheAlaLeuSerGlnLysGluLeuAlaIleIleHisGlyProProGlyThrGlyLysThrThrThrValValGluIleIleLeuGlnAlaValLysGlnGlyLeuLysValLeuCysCysAlaProSerAsnIleAlaValAspAsnLeuValGluArgLeuAlaLeuCysLysGlnArgIleLeuArgLeuGlyHisProAlaArgLeuLeuGluSerIleGlnGlnHisSerLeuAspAlaValLeuAlaArgSerAspSerAlaGlnIleValAlaAspIleArgLysAspIleAspGlnValPheValLysAsnLysLysThrGlnAspLysArgGluLysSerAsnPheArgAsnGluIleLysLeuLeuArgLysGluLeuLysGluArgGluGluAlaAlaMetLeuGluSerLeuThrSerAlaAsnValValLeuAlaThrAsnThrGlyAlaSerAlaAspGlyProLeuLysLeuLeuProGluSerTyrPheAspValValValIleAspGluCysAlaGlnAlaLeuGluAlaSerCysTrpIleProLeuLeuLysAlaArgLysCysIleLeuAlaGlyAspHisLysGlnLeuProProThrThrValSerHisLysAlaAlaLeuAlaGlyLeuSerLeuSerLeuMetGluArgLeuAlaGluGluTyrGlyAlaArgValValArgThrLeuThrValGlnTyrArgMetHisGlnAlaIleMetArgTrpAlaSerAspThrMetTyrLeuGlyGlnLeuThrAlaHisSerSerValAlaArgHisLeuLeuArgAspLeuProGlyValAlaAlaThrGluGluThrGlyValProLeuLeuLeuValAspThrAlaGlyCysGlyLeuPheGluLeuGluGluGluAspGluGlnSerLysGlyAsnProGlyGluValArgLeuValSerLeuHisIleGlnAlaLeuValAspAlaGlyValProAlaArgAspIleAlaValValSerProTyrAsnLeuGlnAlaProTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS569800" }, { "coordinates": [ { "allele": "T", "end": 219, "referenceAllele": "C", "start": 218 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "XR_949903.3:n.219C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS615424" }, { "@id": "http://reg.genome.network/allele/PA254650", "coordinates": [ { "allele": "T", "end": 183, "referenceAllele": "C", "start": 182 } ], "gene": "http://reg.genome.network/gene/GN005542", "geneNCBI_id": 3508, "geneSymbol": "IGHMBP2", "hgvs": [ "NM_002180.3:c.121C>T" ], "proteinEffect": { "hgvs": "NP_002171.2:p.Gln41Ter", "hgvsWellDefined": "NP_002171.2:p.Gln41_Thr993delinsSerArgGlyValCysLeuLeuLysLeuGlnValSerSerGlnArgThrGlyLeuTyrGlyArgLeuLeuValThrPheGluProArgArgTyrGlySerAlaAlaAlaLeuProSerAsnSerPheThrSerGlyAspIleValGlyLeuTyrAspAlaAlaAsnGluGlySerGlnLeuAlaThrGlyIleLeuThrArgValThrGlnLysSerValThrValAlaPheAspGluSerHisAspPheGlnLeuSerLeuAspArgGluAsnSerTyrArgLeuLeuLysLeuAlaAsnAspValThrTyrArgArgLeuLysLysAlaLeuIleAlaLeuLysLysTyrHisSerGlyProAlaSerSerLeuIleGluValLeuPheGlyArgSerAlaProSerProAlaSerGluIleHisProLeuThrPhePheAsnThrCysLeuAspThrSerGlnLysGluAlaValLeuPheAlaLeuSerGlnLysGluLeuAlaIleIleHisGlyProProGlyThrGlyLysThrThrThrValValGluIleIleLeuGlnAlaValLysGlnGlyLeuLysValLeuCysCysAlaProSerAsnIleAlaValAspAsnLeuValGluArgLeuAlaLeuCysLysGlnArgIleLeuArgLeuGlyHisProAlaArgLeuLeuGluSerIleGlnGlnHisSerLeuAspAlaValLeuAlaArgSerAspSerAlaGlnIleValAlaAspIleArgLysAspIleAspGlnValPheValLysAsnLysLysThrGlnAspLysArgGluLysSerAsnPheArgAsnGluIleLysLeuLeuArgLysGluLeuLysGluArgGluGluAlaAlaMetLeuGluSerLeuThrSerAlaAsnValValLeuAlaThrAsnThrGlyAlaSerAlaAspGlyProLeuLysLeuLeuProGluSerTyrPheAspValValValIleAspGluCysAlaGlnAlaLeuGluAlaSerCysTrpIleProLeuLeuLysAlaArgLysCysIleLeuAlaGlyAspHisLysGlnLeuProProThrThrValSerHisLysAlaAlaLeuAlaGlyLeuSerLeuSerLeuMetGluArgLeuAlaGluGluTyrGlyAlaArgValValArgThrLeuThrValGlnTyrArgMetHisGlnAlaIleMetArgTrpAlaSerAspThrMetTyrLeuGlyGlnLeuThrAlaHisSerSerValAlaArgHisLeuLeuArgAspLeuProGlyValAlaAlaThrGluGluThrGlyValProLeuLeuLeuValAspThrAlaGlyCysGlyLeuPheGluLeuGluGluGluAspGluGlnSerLysGlyAsnProGlyGluValArgLeuValSerLeuHisIleGlnAlaLeuValAspAlaGlyValProAlaArgAspIleAlaValValSerProTyrAsnLeuGlnValAspLeuLeuArgGlnSerLeuValHisArgHisProGluLeuGluIleLysSerValAspGlyPheGlnGlyArgGluLysGluAlaValIleLeuSerPheValArgSerAsnArgLysGlyGluValGlyPheLeuAlaGluAspArgArgIleAsnValAlaValThrArgAlaArgArgHisValAlaValIleCysAspSerArgThrValAsnAsnHisAlaPheLeuLysThrLeuValGluTyrPheThrGlnHisGlyGluValArgThrAlaPheGluTyrLeuAspAspIleValProGluAsnTyrSerHisGluAsnSerGlnGlySerSerHisAlaAlaThrLysProGlnGlyProAlaThrSerThrArgThrGlySerGlnArgGlnGluGlyGlyGlnGluAlaAlaAlaProAlaArgGlnGlyArgLysLysProAlaGlyLysSerLeuAlaSerGluAlaProSerGlnProSerLeuAsnGlyGlySerProGluGlyValGluSerGlnAspGlyValAspHisPheArgAlaMetIleValGluPheMetAlaSerLysLysMetGlnLeuGluPheProProSerLeuAsnSerHisAspArgLeuArgValHisGlnIleAlaGluGluHisGlyLeuArgHisAspSerSerGlyGluGlyLysArgArgPheIleThrValSerLysArgAlaProArgProArgAlaAlaLeuGlyProProAlaGlyThrGlyGlyProAlaProLeuGlnProValProProThrProAlaGlnThrGluGlnProProArgGluGlnArgGlyProAspGlnProAspLeuArgThrLeuHisLeuGluArgLeuGlnArgValArgSerAlaGlnGlyGlnProAlaSerLysGluGlnGlnAlaSerGlyGlnGlnLysLeuProGluLysLysLysLysLysAlaLysGlyHisProAlaThrAspLeuProThrGluGluAspPheGluAlaLeuValSerAlaAlaValLysAlaAspAsnThrCysGlyPheAlaLysCysThrAlaGlyValThrThrLeuGlyGlnPheCysGlnLeuCysSerArgArgTyrCysLeuSerHisHisLeuProGluIleHisGlyCysGlyGluArgAlaArgAlaHisAlaArgGlnArgIleSerArgGluGlyValLeuTyrAlaGlySerGlyThrLysAsnGlySerLeuAspProAlaLysArgAlaGlnLeuGlnArgArgLeuAspLysLysLeuSerGluLeuSerAsnGlnArgThrSerArgArgLysGluArgGlyThrTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS695474", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000255078.8:c.121C>T" }, "RefSeq": { "hgvs": "NM_002180.3:c.121C>T" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000255078.4:p.Gln41Ter" }, "RefSeq": { "hgvs": "NP_002171.2:p.Gln41Ter" } } } } ], "type": "nucleotide" }