{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA2470558092",
  "communityStandardTitle": [
    "NM_004654.4(USP9Y):c.3562-707C="
  ],
  "externalRecords": {
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/34790845",
        "rs": 34790845
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "C",
          "end": 12789700,
          "referenceAllele": "C",
          "start": 12789699
        }
      ],
      "hgvs": [
        "NC_000024.10:g.12789700C=",
        "CM000686.2:g.12789700C="
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000072"
    },
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "C",
          "end": 14901633,
          "referenceAllele": "C",
          "start": 14901632
        }
      ],
      "hgvs": [
        "NC_000024.9:g.14901633C=",
        "CM000686.1:g.14901633C="
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000048"
    },
    {
      "chromosome": "Y",
      "coordinates": [
        {
          "allele": "C",
          "end": 13411027,
          "referenceAllele": "C",
          "start": 13411026
        }
      ],
      "hgvs": [
        "NC_000024.8:g.13411027C="
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000024"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 93474,
          "referenceAllele": "C",
          "start": 93473
        }
      ],
      "hgvs": [
        "NG_008311.1:g.93474C="
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001020"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 4147,
          "endIntronDirection": "-",
          "endIntronOffset": 706,
          "referenceAllele": "C",
          "start": 4147,
          "startIntronDirection": "-",
          "startIntronOffset": 707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "ENST00000651177.1:c.3562-707C="
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000498372.1:n.3562-707C="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS771510"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 4506,
          "endIntronDirection": "-",
          "endIntronOffset": 706,
          "referenceAllele": "C",
          "start": 4506,
          "startIntronDirection": "-",
          "startIntronOffset": 707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "ENST00000338981.7:c.3562-707C="
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000342812.3:n.3562-707C="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS260776",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000338981.7:c.3562-707C="
          },
          "RefSeq": {
            "hgvs": "NM_004654.4:c.3562-707C="
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000342812.3:n.3562-707C="
          },
          "RefSeq": {
            "hgvs": "NP_004645.2:n.3562-707C="
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 3573,
          "endIntronDirection": "-",
          "endIntronOffset": 706,
          "referenceAllele": "C",
          "start": 3573,
          "startIntronDirection": "-",
          "startIntronOffset": 707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "ENST00000426564.6:n.3574-707C="
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS289274"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 4506,
          "endIntronDirection": "-",
          "endIntronOffset": 706,
          "referenceAllele": "C",
          "start": 4506,
          "startIntronDirection": "-",
          "startIntronOffset": 707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "NM_004654.3:c.3562-707C="
      ],
      "proteinEffect": {
        "hgvs": "NP_004645.2:n.3562-707C="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029807"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 3644,
          "endIntronDirection": "-",
          "endIntronOffset": 706,
          "referenceAllele": "C",
          "start": 3644,
          "startIntronDirection": "-",
          "startIntronOffset": 707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "XM_011531469.1:c.3562-707C="
      ],
      "proteinEffect": {
        "hgvs": "XP_011529771.1:n.3562-707C="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS098505"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 3576,
          "endIntronDirection": "-",
          "endIntronOffset": 706,
          "referenceAllele": "C",
          "start": 3576,
          "startIntronDirection": "-",
          "startIntronOffset": 707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "XM_011531470.1:c.3328-707C="
      ],
      "proteinEffect": {
        "hgvs": "XP_011529772.1:n.3328-707C="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS098506"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 3661,
          "endIntronDirection": "-",
          "endIntronOffset": 706,
          "referenceAllele": "C",
          "start": 3661,
          "startIntronDirection": "-",
          "startIntronOffset": 707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "XM_017030078.2:c.3577-707C="
      ],
      "proteinEffect": {
        "hgvs": "XP_016885567.1:n.3577-707C="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579539"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 4506,
          "endIntronDirection": "-",
          "endIntronOffset": 706,
          "referenceAllele": "C",
          "start": 4506,
          "startIntronDirection": "-",
          "startIntronOffset": 707
        }
      ],
      "gene": "http://reg.genome.network/gene/GN012633",
      "geneNCBI_id": 8287,
      "geneSymbol": "USP9Y",
      "hgvs": [
        "NM_004654.4:c.3562-707C="
      ],
      "proteinEffect": {
        "hgvs": "NP_004645.2:n.3562-707C="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696203",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000338981.7:c.3562-707C="
          },
          "RefSeq": {
            "hgvs": "NM_004654.4:c.3562-707C="
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000342812.3:n.3562-707C="
          },
          "RefSeq": {
            "hgvs": "NP_004645.2:n.3562-707C="
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}