{ "@context": "http://reg.genome.network/schema/allele.jsonld", "@id": "http://reg.genome.network/allele/CA232962", "communityStandardTitle": [ "NM_001110792.2(MECP2):c.370A>T (p.Lys124Ter)" ], "externalRecords": { "ClinVarAlleles": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=153271[alleleid]", "alleleId": 153271, "preferredName": "NM_001110792.2(MECP2):c.370A>T (p.Lys124Ter)" } ], "ClinVarVariations": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/143539", "RCV": [ "RCV000133072", "RCV004527359" ], "variationId": 143539 } ], "MyVariantInfo_hg19": [ { "@id": "http://myvariant.info/v1/variant/chrX:g.153297701T>A?assembly=hg19", "id": "chrX:g.153297701T>A" } ], "MyVariantInfo_hg38": [ { "@id": "http://myvariant.info/v1/variant/chrX:g.154032250T>A?assembly=hg38", "id": "chrX:g.154032250T>A" } ], "dbSNP": [ { "@id": "http://www.ncbi.nlm.nih.gov/snp/267608398", "rs": 267608398 } ] }, "genomicAlleles": [ { "chromosome": "X", "coordinates": [ { "allele": "A", "end": 154032250, "referenceAllele": "T", "start": 154032249 } ], "hgvs": [ "NC_000023.11:g.154032250T>A", "CM000685.2:g.154032250T>A" ], "referenceGenome": "GRCh38", "referenceSequence": "http://reg.genome.network/refseq/RS000071" }, { "chromosome": "X", "coordinates": [ { "allele": "A", "end": 153297701, "referenceAllele": "T", "start": 153297700 } ], "hgvs": [ "NC_000023.10:g.153297701T>A", "CM000685.1:g.153297701T>A" ], "referenceGenome": "GRCh37", "referenceSequence": "http://reg.genome.network/refseq/RS000047" }, { "chromosome": "X", "coordinates": [ { "allele": "A", "end": 152950895, "referenceAllele": "T", "start": 152950894 } ], "hgvs": [ "NC_000023.9:g.152950895T>A" ], "referenceGenome": "NCBI36", "referenceSequence": "http://reg.genome.network/refseq/RS000023" }, { "coordinates": [ { "allele": "T", "end": 109878, "referenceAllele": "A", "start": 109877 } ], "hgvs": [ "NG_007107.2:g.109878A>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS000484" }, { "coordinates": [ { "allele": "T", "end": 109854, "referenceAllele": "A", "start": 109853 } ], "hgvs": [ "NG_007107.3:g.109854A>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS733307" } ], "transcriptAlleles": [ { "coordinates": [ { "allele": "T", "end": 546, "referenceAllele": "A", "start": 545 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000303391.11:c.334A>T" ], "proteinEffect": { "hgvs": "ENSP00000301948.6:p.Lys112Ter", "hgvsWellDefined": "ENSP00000301948.6:p.Lys112_Ser486delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS745028", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Plus Clinical", "nucleotide": { "Ensembl": { "hgvs": "ENST00000303391.11:c.334A>T" }, "RefSeq": { "hgvs": "NM_004992.4:c.334A>T" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000301948.6:p.Lys112Ter" }, "RefSeq": { "hgvs": "NP_004983.1:p.Lys112Ter" } } } }, { "coordinates": [ { "allele": "T", "end": 422, "referenceAllele": "A", "start": 421 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000453960.7:c.370A>T" ], "proteinEffect": { "hgvs": "ENSP00000395535.2:p.Lys124Ter", "hgvsWellDefined": "ENSP00000395535.2:p.Lys124_Ser498delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS756448", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000453960.7:c.370A>T" }, "RefSeq": { "hgvs": "NM_001110792.2:c.370A>T" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000395535.2:p.Lys124Ter" }, "RefSeq": { "hgvs": "NP_001104262.1:p.Lys124Ter" } } } }, { "coordinates": [ { "allele": "T", "end": 584, "referenceAllele": "A", "start": 583 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000303391.10:c.334A>T" ], "proteinEffect": { "hgvs": "ENSP00000301948.6:p.Lys112Ter", "hgvsWellDefined": "ENSP00000301948.6:p.Lys112_Ser486delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS255311" }, { "coordinates": [ { "allele": "T", "end": 660, "referenceAllele": "A", "start": 659 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000369957.5:c.*388A>T" ], "proteinEffect": { "hgvs": "ENSP00000358973.4:n.*388A>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS267791" }, { "coordinates": [ { "allele": "T", "end": 394, "referenceAllele": "A", "start": 393 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000407218.5:c.370A>T" ], "proteinEffect": { "hgvs": "ENSP00000384865.2:p.Lys124Ter", "hgvsWellDefined": "ENSP00000384865.2:p.Lys124_Arg184delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysLeuGlnGluLeuAlaGluAlaGlyAspAlaProLysGlyAlaAlaProArgAspProArgArgProArgGlnArgValCysArgTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS280863" }, { "coordinates": [ { "allele": "T", "end": 469, "referenceAllele": "A", "start": 468 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000453960.6:c.370A>T" ], "proteinEffect": { "hgvs": "ENSP00000395535.2:p.Lys124Ter", "hgvsWellDefined": "ENSP00000395535.2:p.Lys124_Ser498delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS302351" }, { "coordinates": [ { "allele": "T", "end": 2682, "referenceAllele": "A", "start": 2681 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000486506.5:n.2682A>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS325304" }, { "coordinates": [ { "allele": "T", "end": 418, "referenceAllele": "A", "start": 417 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000611468.1:c.322A>T" ], "proteinEffect": { "hgvs": "ENSP00000479736.1:p.Lys108Ter", "hgvsWellDefined": "ENSP00000479736.1:p.Lys108_Thr168delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGluProLeuProAlaArgAlaGluThrThrTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS400858" }, { "coordinates": [ { "allele": "T", "end": 560, "referenceAllele": "A", "start": 559 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000619732.4:c.334A>T" ], "proteinEffect": { "hgvs": "ENSP00000480973.1:p.Lys112Ter", "hgvsWellDefined": "ENSP00000480973.1:p.Lys112_Gly509delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluLeuAlaAspPheThrArgSerGlyLeuGlnSerLysProThrArgIleLysAlaAlaValValSerSerProTyrGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS404497" }, { "coordinates": [ { "allele": "T", "end": 418, "referenceAllele": "A", "start": 417 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000622433.4:c.322A>T" ], "proteinEffect": { "hgvs": "ENSP00000484470.1:p.Lys108Ter", "hgvsWellDefined": "ENSP00000484470.1:p.Lys108_Arg324delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluPheTyrProIleCysAlaGlyAspArgThrProHisGlnGluAlaGlnAspProGlyAspGlyGlnHisArgGlyGlnGlySerGlyGluAlaProAlaGlyValHisProArgTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS405724" }, { "coordinates": [ { "allele": "T", "end": 566, "referenceAllele": "A", "start": 565 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "ENST00000628176.2:c.334A>T" ], "proteinEffect": { "hgvs": "ENSP00000486978.1:p.Lys112Ter", "hgvsWellDefined": "ENSP00000486978.1:p.Lys112_Arg172delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysLeuGlnGluLeuAlaGluAlaGlyAspAlaProLysGlyAlaAlaProArgAspProArgArgProArgGlnArgValCysArgTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS407005" }, { "@id": "http://reg.genome.network/allele/PA232964", "coordinates": [ { "allele": "T", "end": 436, "referenceAllele": "A", "start": 435 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001110792.1:c.370A>T" ], "proteinEffect": { "hgvs": "NP_001104262.1:p.Lys124Ter", "hgvsWellDefined": "NP_001104262.1:p.Lys124_Ser498delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS011171" }, { "@id": "http://reg.genome.network/allele/PA2826955551", "coordinates": [ { "allele": "T", "end": 728, "referenceAllele": "A", "start": 727 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001316337.1:c.55A>T" ], "proteinEffect": { "hgvs": "NP_001303266.1:p.Lys19Ter", "hgvsWellDefined": "NP_001303266.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS026582" }, { "@id": "http://reg.genome.network/allele/PA232963", "coordinates": [ { "allele": "T", "end": 560, "referenceAllele": "A", "start": 559 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_004992.3:c.334A>T" ], "proteinEffect": { "hgvs": "NP_004983.1:p.Lys112Ter", "hgvsWellDefined": "NP_004983.1:p.Lys112_Ser486delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS030122" }, { "coordinates": [ { "allele": "T", "end": 589, "referenceAllele": "A", "start": 588 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "XM_005274681.3:c.334A>T" ], "proteinEffect": { "hgvs": "XP_005274738.1:p.Lys112Ter", "hgvsWellDefined": "XP_005274738.1:p.Lys112_Ser486delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS068037" }, { "coordinates": [ { "allele": "T", "end": 628, "referenceAllele": "A", "start": 627 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "XM_005274682.3:c.55A>T" ], "proteinEffect": { "hgvs": "XP_005274739.1:p.Lys19Ter", "hgvsWellDefined": "XP_005274739.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS068038" }, { "coordinates": [ { "allele": "T", "end": 846, "referenceAllele": "A", "start": 845 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "XM_005274683.3:c.55A>T" ], "proteinEffect": { "hgvs": "XP_005274740.1:p.Lys19Ter", "hgvsWellDefined": "XP_005274740.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS068039" }, { "coordinates": [ { "allele": "T", "end": 452, "referenceAllele": "A", "start": 451 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "XM_011531166.1:c.55A>T" ], "proteinEffect": { "hgvs": "XP_011529468.1:p.Lys19Ter", "hgvsWellDefined": "XP_011529468.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS098206" }, { "coordinates": [ { "allele": "T", "end": 420, "referenceAllele": "A", "start": 419 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "XM_006724819.3:c.-227A>T" ], "proteinEffect": { "hgvs": "XP_006724882.1:n.-227A>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS541076" }, { "coordinates": [ { "allele": "T", "end": 447, "referenceAllele": "A", "start": 446 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "XM_011531166.2:c.55A>T" ], "proteinEffect": { "hgvs": "XP_011529468.1:p.Lys19Ter", "hgvsWellDefined": "XP_011529468.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS550259" }, { "coordinates": [ { "allele": "T", "end": 964, "referenceAllele": "A", "start": 963 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "XM_024452383.1:c.55A>T" ], "proteinEffect": { "hgvs": "XP_024308151.1:p.Lys19Ter", "hgvsWellDefined": "XP_024308151.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS585878" }, { "coordinates": [ { "allele": "T", "end": 505, "referenceAllele": "A", "start": 504 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "XM_024452384.1:c.55A>T" ], "proteinEffect": { "hgvs": "XP_024308152.1:p.Lys19Ter", "hgvsWellDefined": "XP_024308152.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS585879" }, { "@id": "http://reg.genome.network/allele/PA232964", "coordinates": [ { "allele": "T", "end": 422, "referenceAllele": "A", "start": 421 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001110792.2:c.370A>T" ], "proteinEffect": { "hgvs": "NP_001104262.1:p.Lys124Ter", "hgvsWellDefined": "NP_001104262.1:p.Lys124_Ser498delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS676663", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000453960.7:c.370A>T" }, "RefSeq": { "hgvs": "NM_001110792.2:c.370A>T" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000395535.2:p.Lys124Ter" }, "RefSeq": { "hgvs": "NP_001104262.1:p.Lys124Ter" } } } }, { "@id": "http://reg.genome.network/allele/PA2826955551", "coordinates": [ { "allele": "T", "end": 714, "referenceAllele": "A", "start": 713 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001316337.2:c.55A>T" ], "proteinEffect": { "hgvs": "NP_001303266.1:p.Lys19Ter", "hgvsWellDefined": "NP_001303266.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS684168" }, { "@id": "http://reg.genome.network/allele/PA2828325033", "coordinates": [ { "allele": "T", "end": 1009, "referenceAllele": "A", "start": 1008 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001369391.2:c.55A>T" ], "proteinEffect": { "hgvs": "NP_001356320.1:p.Lys19Ter", "hgvsWellDefined": "NP_001356320.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS691616" }, { "@id": "http://reg.genome.network/allele/PA2828325898", "coordinates": [ { "allele": "T", "end": 658, "referenceAllele": "A", "start": 657 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001369392.2:c.55A>T" ], "proteinEffect": { "hgvs": "NP_001356321.1:p.Lys19Ter", "hgvsWellDefined": "NP_001356321.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS691617" }, { "@id": "http://reg.genome.network/allele/PA2828326765", "coordinates": [ { "allele": "T", "end": 534, "referenceAllele": "A", "start": 533 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001369393.2:c.55A>T" ], "proteinEffect": { "hgvs": "NP_001356322.1:p.Lys19Ter", "hgvsWellDefined": "NP_001356322.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS691618" }, { "@id": "http://reg.genome.network/allele/PA916047736", "coordinates": [ { "allele": "T", "end": 465, "referenceAllele": "A", "start": 464 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001369394.1:c.55A>T" ], "proteinEffect": { "hgvs": "NP_001356323.1:p.Lys19Ter", "hgvsWellDefined": "NP_001356323.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS691619" }, { "@id": "http://reg.genome.network/allele/PA916047736", "coordinates": [ { "allele": "T", "end": 465, "referenceAllele": "A", "start": 464 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001369394.2:c.55A>T" ], "proteinEffect": { "hgvs": "NP_001356323.1:p.Lys19Ter", "hgvsWellDefined": "NP_001356323.1:p.Lys19_Ser393delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS721143" }, { "coordinates": [ { "allele": "T", "end": 658, "referenceAllele": "A", "start": 657 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001386137.1:c.-227A>T" ], "proteinEffect": { "hgvs": "NP_001373066.1:n.-227A>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS724415" }, { "coordinates": [ { "allele": "T", "end": 546, "referenceAllele": "A", "start": 545 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001386138.1:c.-227A>T" ], "proteinEffect": { "hgvs": "NP_001373067.1:n.-227A>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS724416" }, { "coordinates": [ { "allele": "T", "end": 422, "referenceAllele": "A", "start": 421 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_001386139.1:c.-227A>T" ], "proteinEffect": { "hgvs": "NP_001373068.1:n.-227A>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS724417" }, { "@id": "http://reg.genome.network/allele/PA232963", "coordinates": [ { "allele": "T", "end": 546, "referenceAllele": "A", "start": 545 } ], "gene": "http://reg.genome.network/gene/GN006990", "geneNCBI_id": 4204, "geneSymbol": "MECP2", "hgvs": [ "NM_004992.4:c.334A>T" ], "proteinEffect": { "hgvs": "NP_004983.1:p.Lys112Ter", "hgvsWellDefined": "NP_004983.1:p.Lys112_Ser486delinsSerGlyArgSerAlaGlyLysTyrAspValTyrLeuIleAsnProGlnGlyLysAlaPheArgSerLysValGluLeuIleAlaTyrPheGluLysValGlyAspThrSerLeuAspProAsnAspPheAspPheThrValThrGlyArgGlySerProSerArgArgGluGlnLysProProLysLysProLysSerProLysAlaProGlyThrGlyArgGlyArgGlyArgProLysGlySerGlyThrThrArgProLysAlaAlaThrSerGluGlyValGlnValLysArgValLeuGluLysSerProGlyLysLeuLeuValLysMetProPheGlnThrSerProGlyGlyLysAlaGluGlyGlyGlyAlaThrThrSerThrGlnValMetValIleLysArgProGlyArgLysArgLysAlaGluAlaAspProGlnAlaIleProLysLysArgGlyArgLysProGlySerValValAlaAlaAlaAlaAlaGluAlaLysLysLysAlaValLysGluSerSerIleArgSerValGlnGluThrValLeuProIleLysLysArgLysThrArgGluThrValSerIleGluValLysGluValValLysProLeuLeuValSerThrLeuGlyGluLysSerGlyLysGlyLeuLysThrCysLysSerProGlyArgLysSerLysGluSerSerProLysGlyArgSerSerSerAlaSerSerProProLysLysGluHisHisHisHisHisHisHisSerGluSerProLysAlaProValProLeuLeuProProLeuProProProProProGluProGluSerSerGluAspProThrSerProProGluProGlnAspLeuSerSerSerValCysLysGluGluLysMetProArgGlyGlySerLeuGluSerAspGlyCysProLysGluProAlaLysThrGlnProAlaValAlaThrAlaAlaThrAlaAlaGluLysTyrLysHisArgGlyGluGlyGluArgLysAspIleValSerSerSerMetProArgProAsnArgGluGluProValAspSerArgThrProValThrGluArgValSerTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS727571", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Plus Clinical", "nucleotide": { "Ensembl": { "hgvs": "ENST00000303391.11:c.334A>T" }, "RefSeq": { "hgvs": "NM_004992.4:c.334A>T" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000301948.6:p.Lys112Ter" }, "RefSeq": { "hgvs": "NP_004983.1:p.Lys112Ter" } } } } ], "type": "nucleotide" }