{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA219797",
  "communityStandardTitle": [
    "NM_000448.3(RAG1):c.1303A>G (p.Met435Val)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=79572[alleleid]",
        "alleleId": 79572,
        "preferredName": "NM_000448.3(RAG1):c.1303A>G (p.Met435Val)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/68680",
        "RCV": [
          "RCV000059561",
          "RCV000762842",
          "RCV001069679",
          "RCV001804802",
          "RCV003474644"
        ],
        "variationId": 68680
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/11-36596157-A-G",
        "id": "11-36596157-A-G",
        "variant": "11:36596157 A / G"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr11:g.36596157A>G?assembly=hg19",
        "id": "chr11:g.36596157A>G"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr11:g.36574607A>G?assembly=hg38",
        "id": "chr11:g.36574607A>G"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/141524540",
        "rs": 141524540
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/11-36596157-A-G?dataset=gnomad_r2_1",
        "id": "11-36596157-A-G",
        "variant": "11:36596157 A / G"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/11-36574607-A-G?dataset=gnomad_r3",
        "id": "11-36574607-A-G",
        "variant": "11:36574607 A / G"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/11-36574607-A-G?dataset=gnomad_r4",
        "id": "11-36574607-A-G",
        "variant": "11:36574607 A / G"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "G",
          "end": 36574607,
          "referenceAllele": "A",
          "start": 36574606
        }
      ],
      "hgvs": [
        "NC_000011.10:g.36574607A>G",
        "CM000673.2:g.36574607A>G"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000059"
    },
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "G",
          "end": 36596157,
          "referenceAllele": "A",
          "start": 36596156
        }
      ],
      "hgvs": [
        "NC_000011.9:g.36596157A>G",
        "CM000673.1:g.36596157A>G"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000035"
    },
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "G",
          "end": 36552733,
          "referenceAllele": "A",
          "start": 36552732
        }
      ],
      "hgvs": [
        "NC_000011.8:g.36552733A>G"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000011"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11595,
          "referenceAllele": "A",
          "start": 11594
        }
      ],
      "hgvs": [
        "NG_007528.1:g.11595A>G",
        "LRG_98:g.11595A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000636"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1599,
          "referenceAllele": "A",
          "start": 1598
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000697713.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513411.1:p.Met435Val",
        "hgvsWellDefined": "ENSP00000513411.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908925"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1483,
          "referenceAllele": "A",
          "start": 1482
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000697714.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513412.1:p.Met435Val",
        "hgvsWellDefined": "ENSP00000513412.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908926"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1726,
          "referenceAllele": "A",
          "start": 1725
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000697715.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513413.1:p.Met435Val",
        "hgvsWellDefined": "ENSP00000513413.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908927"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1433,
          "referenceAllele": "A",
          "start": 1432
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000299440.6:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000299440.5:p.Met435Val",
        "hgvsWellDefined": "ENSP00000299440.5:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS744676",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000299440.6:c.1303A>G"
          },
          "RefSeq": {
            "hgvs": "NM_000448.3:c.1303A>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000299440.5:p.Met435Val"
          },
          "RefSeq": {
            "hgvs": "NP_000439.2:p.Met435Val"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1415,
          "referenceAllele": "A",
          "start": 1414
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000299440.5:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000299440.5:p.Met435Val",
        "hgvsWellDefined": "ENSP00000299440.5:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS254725"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1939,
          "referenceAllele": "A",
          "start": 1938
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000534663.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000434610.1:p.Met435Val",
        "hgvsWellDefined": "ENSP00000434610.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS359238"
    },
    {
      "@id": "http://reg.genome.network/allele/PA219799",
      "coordinates": [
        {
          "allele": "G",
          "end": 1427,
          "referenceAllele": "A",
          "start": 1426
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_000448.2:c.1303A>G",
        "LRG_98t1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_000439.1:p.Met435Val",
        "hgvsWellDefined": "NP_000439.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006510"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1455,
          "referenceAllele": "A",
          "start": 1454
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_005253041.3:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_005253098.1:p.Met435Val",
        "hgvsWellDefined": "XP_005253098.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS060133"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1569,
          "referenceAllele": "A",
          "start": 1568
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_011520250.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_011518552.1:p.Met435Val",
        "hgvsWellDefined": "XP_011518552.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS087419"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1667,
          "referenceAllele": "A",
          "start": 1666
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_011520251.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_011518553.1:p.Met435Val",
        "hgvsWellDefined": "XP_011518553.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS087420"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1489,
          "referenceAllele": "A",
          "start": 1488
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_005253041.4:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_005253098.1:p.Met435Val",
        "hgvsWellDefined": "XP_005253098.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS533889"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 1603,
          "referenceAllele": "A",
          "start": 1602
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_011520250.2:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "XP_011518552.1:p.Met435Val",
        "hgvsWellDefined": "XP_011518552.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS545657"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825177414",
      "coordinates": [
        {
          "allele": "G",
          "end": 1433,
          "referenceAllele": "A",
          "start": 1432
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_000448.3:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_000439.2:p.Met435Val",
        "hgvsWellDefined": "NP_000439.2:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS674851",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000299440.6:c.1303A>G"
          },
          "RefSeq": {
            "hgvs": "NM_000448.3:c.1303A>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000299440.5:p.Met435Val"
          },
          "RefSeq": {
            "hgvs": "NP_000439.2:p.Met435Val"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2828706769",
      "coordinates": [
        {
          "allele": "G",
          "end": 1776,
          "referenceAllele": "A",
          "start": 1775
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_001377277.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001364206.1:p.Met435Val",
        "hgvsWellDefined": "NP_001364206.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS695063"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2828707450",
      "coordinates": [
        {
          "allele": "G",
          "end": 1714,
          "referenceAllele": "A",
          "start": 1713
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_001377278.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001364207.1:p.Met435Val",
        "hgvsWellDefined": "NP_001364207.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS695064"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2828708131",
      "coordinates": [
        {
          "allele": "G",
          "end": 1616,
          "referenceAllele": "A",
          "start": 1615
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_001377279.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001364208.1:p.Met435Val",
        "hgvsWellDefined": "NP_001364208.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS695065"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2573074395",
      "coordinates": [
        {
          "allele": "G",
          "end": 1502,
          "referenceAllele": "A",
          "start": 1501
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_001377280.1:c.1303A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001364209.1:p.Met435Val",
        "hgvsWellDefined": "NP_001364209.1:p.Met435Val"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS695066"
    }
  ],
  "type": "nucleotide"
}