{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA1884108163",
  "communityStandardTitle": [
    "NM_178138.6(LHX3):c.332A= (p.Tyr111=)"
  ],
  "externalRecords": {
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/104894117",
        "rs": 104894117
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "9",
      "coordinates": [
        {
          "allele": "T",
          "end": 136199800,
          "referenceAllele": "T",
          "start": 136199799
        }
      ],
      "hgvs": [
        "NC_000009.12:g.136199800T=",
        "CM000671.2:g.136199800T="
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000057"
    },
    {
      "chromosome": "9",
      "coordinates": [
        {
          "allele": "T",
          "end": 139091646,
          "referenceAllele": "T",
          "start": 139091645
        }
      ],
      "hgvs": [
        "NC_000009.11:g.139091646T=",
        "CM000671.1:g.139091646T="
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000033"
    },
    {
      "chromosome": "9",
      "coordinates": [
        {
          "allele": "T",
          "end": 138231467,
          "referenceAllele": "T",
          "start": 138231466
        }
      ],
      "hgvs": [
        "NC_000009.10:g.138231467T="
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000009"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 10310,
          "referenceAllele": "A",
          "start": 10309
        }
      ],
      "hgvs": [
        "NG_008097.1:g.10310A="
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000842"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 497,
          "referenceAllele": "A",
          "start": 496
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "ENST00000371746.9:c.347A="
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000360811.3:p.Tyr116="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS750856"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 448,
          "referenceAllele": "A",
          "start": 447
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "ENST00000371748.10:c.332A="
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000360813.4:p.Tyr111="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS750857",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000371748.10:c.332A="
          },
          "RefSeq": {
            "hgvs": "NM_178138.6:c.332A="
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000360813.4:p.Tyr111="
          },
          "RefSeq": {
            "hgvs": "NP_835258.1:p.Tyr111="
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1157,
          "referenceAllele": "A",
          "start": 1156
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "ENST00000645419.1:n.1157A="
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS768341"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 466,
          "referenceAllele": "A",
          "start": 465
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "ENST00000371746.7:c.347A="
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000360811.3:p.Tyr116="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS268732"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 429,
          "referenceAllele": "A",
          "start": 428
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "ENST00000371748.9:c.332A="
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000360813.4:p.Tyr111="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS268734"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 763,
          "referenceAllele": "A",
          "start": 762
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "ENST00000619587.1:c.299A="
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000483080.1:p.Tyr100="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS404449"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 466,
          "referenceAllele": "A",
          "start": 465
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "NM_014564.3:c.347A="
      ],
      "proteinEffect": {
        "hgvs": "NP_055379.1:p.Tyr116="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS033260"
    },
    {
      "@id": "http://reg.genome.network/allele/PA3075622003",
      "coordinates": [
        {
          "allele": "A",
          "end": 429,
          "referenceAllele": "A",
          "start": 428
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "NM_178138.4:c.332A="
      ],
      "proteinEffect": {
        "hgvs": "NP_835258.1:p.Tyr111="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS043455"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 763,
          "referenceAllele": "A",
          "start": 762
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "XM_005263410.1:c.299A="
      ],
      "proteinEffect": {
        "hgvs": "XP_005263467.1:p.Tyr100="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS063803"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 763,
          "referenceAllele": "A",
          "start": 762
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "NM_001363746.1:c.299A="
      ],
      "proteinEffect": {
        "hgvs": "NP_001350675.1:p.Tyr100="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS523529"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 481,
          "referenceAllele": "A",
          "start": 480
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "NM_014564.4:c.347A="
      ],
      "proteinEffect": {
        "hgvs": "NP_055379.1:p.Tyr116="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS525592"
    },
    {
      "@id": "http://reg.genome.network/allele/PA3075622003",
      "coordinates": [
        {
          "allele": "A",
          "end": 449,
          "referenceAllele": "A",
          "start": 448
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "NM_178138.5:c.332A="
      ],
      "proteinEffect": {
        "hgvs": "NP_835258.1:p.Tyr111="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS526825"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 260,
          "referenceAllele": "A",
          "start": 259
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "XM_017015168.1:c.260A="
      ],
      "proteinEffect": {
        "hgvs": "XP_016870657.1:p.Tyr87="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS567951"
    },
    {
      "@id": "http://reg.genome.network/allele/PA3075622003",
      "coordinates": [
        {
          "allele": "A",
          "end": 448,
          "referenceAllele": "A",
          "start": 447
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "NM_178138.6:c.332A="
      ],
      "proteinEffect": {
        "hgvs": "NP_835258.1:p.Tyr111="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS672840",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000371748.10:c.332A="
          },
          "RefSeq": {
            "hgvs": "NM_178138.6:c.332A="
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000360813.4:p.Tyr111="
          },
          "RefSeq": {
            "hgvs": "NP_835258.1:p.Tyr111="
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 497,
          "referenceAllele": "A",
          "start": 496
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006595",
      "geneNCBI_id": 8022,
      "geneSymbol": "LHX3",
      "hgvs": [
        "NM_014564.5:c.347A="
      ],
      "proteinEffect": {
        "hgvs": "NP_055379.1:p.Tyr116="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS697281"
    }
  ],
  "type": "nucleotide"
}