{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA1825399613",
  "communityStandardTitle": [
    "NM_005672.5(PSCA):c.133+80G>T"
  ],
  "externalRecords": {
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/2976392",
        "rs": 2976392
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/8-142681514-G-T?dataset=gnomad_r4",
        "id": "8-142681514-G-T",
        "variant": "8:142681514 G / T"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "8",
      "coordinates": [
        {
          "allele": "T",
          "end": 142681514,
          "referenceAllele": "G",
          "start": 142681513
        }
      ],
      "hgvs": [
        "NC_000008.11:g.142681514G>T",
        "CM000670.2:g.142681514G>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000056"
    },
    {
      "chromosome": "8",
      "coordinates": [
        {
          "allele": "T",
          "end": 143762932,
          "referenceAllele": "G",
          "start": 143762931
        }
      ],
      "hgvs": [
        "NC_000008.10:g.143762932G>T",
        "CM000670.1:g.143762932G>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000032"
    },
    {
      "chromosome": "8",
      "coordinates": [
        {
          "allele": "T",
          "end": 143759934,
          "referenceAllele": "G",
          "start": 143759933
        }
      ],
      "hgvs": [
        "NC_000008.9:g.143759934G>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000008"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 6058,
          "referenceAllele": "G",
          "start": 6057
        }
      ],
      "hgvs": [
        "NG_011722.2:g.6058G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001927"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 16207,
          "referenceAllele": "G",
          "start": 16206
        }
      ],
      "hgvs": [
        "NG_011722.3:g.16207G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS616148"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 177,
          "endIntronDirection": "+",
          "endIntronOffset": 80,
          "referenceAllele": "G",
          "start": 177,
          "startIntronDirection": "+",
          "startIntronOffset": 79
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "ENST00000301258.5:c.133+80G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000301258.4:n.133+80G>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS744827",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000301258.5:c.133+80G>T"
          },
          "RefSeq": {
            "hgvs": "NM_005672.5:c.133+80G>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000301258.4:n.133+80G>T"
          },
          "RefSeq": {
            "hgvs": "NP_005663.2:n.133+80G>T"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 216,
          "endIntronDirection": "+",
          "endIntronOffset": 80,
          "referenceAllele": "G",
          "start": 216,
          "startIntronDirection": "+",
          "startIntronOffset": 79
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "ENST00000301258.4:c.133+80G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000301258.4:n.133+80G>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS254982"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 449,
          "referenceAllele": "G",
          "start": 448
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "ENST00000505305.1:n.449G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS337130"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 356,
          "endIntronDirection": "+",
          "endIntronOffset": 80,
          "referenceAllele": "G",
          "start": 356,
          "startIntronDirection": "+",
          "startIntronOffset": 79
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "ENST00000510969.1:n.356+80G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS341339"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 295,
          "referenceAllele": "G",
          "start": 294
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "ENST00000513264.1:c.*48G>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000426508.1:n.*48G>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS343050"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 264,
          "endIntronDirection": "+",
          "endIntronOffset": 191,
          "referenceAllele": "C",
          "start": 264,
          "startIntronDirection": "+",
          "startIntronOffset": 190
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006199",
      "geneNCBI_id": 8629,
      "geneSymbol": "JRK",
      "hgvs": [
        "ENST00000585503.1:n.264+191C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS388761"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 100,
          "endIntronDirection": "+",
          "endIntronOffset": 191,
          "referenceAllele": "C",
          "start": 100,
          "startIntronDirection": "+",
          "startIntronOffset": 190
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006199",
      "geneNCBI_id": 8629,
      "geneSymbol": "JRK",
      "hgvs": [
        "ENST00000587499.1:n.100+191C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS390127"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 264,
          "endIntronDirection": "+",
          "endIntronOffset": 191,
          "referenceAllele": "C",
          "start": 264,
          "startIntronDirection": "+",
          "startIntronOffset": 190
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006199",
      "geneNCBI_id": 8629,
      "geneSymbol": "JRK",
      "hgvs": [
        "ENST00000587883.5:n.264+191C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS390393"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 130,
          "endIntronDirection": "+",
          "endIntronOffset": 191,
          "referenceAllele": "C",
          "start": 130,
          "startIntronDirection": "+",
          "startIntronOffset": 190
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006199",
      "geneNCBI_id": 8629,
      "geneSymbol": "JRK",
      "hgvs": [
        "ENST00000591180.5:n.130+191C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS392699"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 264,
          "endIntronDirection": "+",
          "endIntronOffset": 191,
          "referenceAllele": "C",
          "start": 264,
          "startIntronDirection": "+",
          "startIntronOffset": 190
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006199",
      "geneNCBI_id": 8629,
      "geneSymbol": "JRK",
      "hgvs": [
        "ENST00000591357.5:n.264+191C>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS392819"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 216,
          "endIntronDirection": "+",
          "endIntronOffset": 80,
          "referenceAllele": "G",
          "start": 216,
          "startIntronDirection": "+",
          "startIntronOffset": 79
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "NM_005672.4:c.133+80G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_005663.2:n.133+80G>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS030757"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 369,
          "endIntronDirection": "+",
          "endIntronOffset": 80,
          "referenceAllele": "G",
          "start": 369,
          "startIntronDirection": "+",
          "startIntronOffset": 79
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "NR_033343.1:n.369+80G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS048969"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 177,
          "endIntronDirection": "+",
          "endIntronOffset": 80,
          "referenceAllele": "G",
          "start": 177,
          "startIntronDirection": "+",
          "startIntronOffset": 79
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "NM_005672.5:c.133+80G>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_005663.2:n.133+80G>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS667087",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000301258.5:c.133+80G>T"
          },
          "RefSeq": {
            "hgvs": "NM_005672.5:c.133+80G>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000301258.4:n.133+80G>T"
          },
          "RefSeq": {
            "hgvs": "NP_005663.2:n.133+80G>T"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 380,
          "endIntronDirection": "+",
          "endIntronOffset": 80,
          "referenceAllele": "G",
          "start": 380,
          "startIntronDirection": "+",
          "startIntronOffset": 79
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009500",
      "geneNCBI_id": 8000,
      "geneSymbol": "PSCA",
      "hgvs": [
        "NR_033343.2:n.380+80G>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS702118"
    }
  ],
  "type": "nucleotide"
}