{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA16617595",
  "communityStandardTitle": [
    "NM_000251.3(MSH2):c.1883del (p.Gly628AspfsTer7)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=405806[alleleid]",
        "alleleId": 405806,
        "preferredName": "NM_000251.3(MSH2):c.1883del (p.Gly628fs)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/421423",
        "RCV": [
          "RCV000482381",
          "RCV000564988",
          "RCV003449213"
        ],
        "variationId": 421423
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr2:g.47702287del?assembly=hg19",
        "id": "chr2:g.47702287del"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr2:g.47475148del?assembly=hg38",
        "id": "chr2:g.47475148del"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/1064795127",
        "rs": 1064795127
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "",
          "end": 47475148,
          "referenceAllele": "G",
          "start": 47475147
        }
      ],
      "hgvs": [
        "NC_000002.12:g.47475148del",
        "CM000664.2:g.47475148del"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000050"
    },
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "",
          "end": 47702287,
          "referenceAllele": "G",
          "start": 47702286
        }
      ],
      "hgvs": [
        "NC_000002.11:g.47702287del",
        "CM000664.1:g.47702287del"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000026"
    },
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "",
          "end": 47555791,
          "referenceAllele": "G",
          "start": 47555790
        }
      ],
      "hgvs": [
        "NC_000002.10:g.47555791del"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000002"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 77025,
          "referenceAllele": "G",
          "start": 77024
        }
      ],
      "hgvs": [
        "NG_007110.2:g.77025del",
        "LRG_218:g.77025del"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000486"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1919,
          "referenceAllele": "G",
          "start": 1918
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000644900.2:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000495641.2:p.Gly628AspfsTer7",
        "hgvsWellDefined": "ENSP00000495641.2:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS914416"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1919,
          "referenceAllele": "G",
          "start": 1918
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000233146.7:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000233146.2:p.Gly628AspfsTer7",
        "hgvsWellDefined": "ENSP00000233146.2:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS740907",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000233146.7:c.1883del"
          },
          "RefSeq": {
            "hgvs": "NM_000251.3:c.1883del"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000233146.2:p.Gly628AspfsTer7"
          },
          "RefSeq": {
            "hgvs": "NP_000242.1:p.Gly628AspfsTer7"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1824,
          "referenceAllele": "G",
          "start": 1823
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000543555.6:c.1685del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000442697.1:p.Gly562AspfsTer7",
        "hgvsWellDefined": "ENSP00000442697.1:p.[Gly562_Leu568delinsAsp;Ala570_Val576del;Val578_Asp580del;Ile582_Val589delinsLeu;Phe591del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS759735"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1933,
          "referenceAllele": "G",
          "start": 1932
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000644092.1:c.*183del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000496351.1:n.*183del"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS767627"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1956,
          "referenceAllele": "G",
          "start": 1955
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000645339.1:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000496441.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "ENSP00000496441.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS768299"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1956,
          "referenceAllele": "G",
          "start": 1955
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000645506.1:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000495455.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "ENSP00000495455.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS768389"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1956,
          "referenceAllele": "G",
          "start": 1955
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000646415.1:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000495543.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "ENSP00000495543.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS768860"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 2106,
          "referenceAllele": "G",
          "start": 2105
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000233146.6:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000233146.2:p.Gly628AspfsTer7",
        "hgvsWellDefined": "ENSP00000233146.2:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247203"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1945,
          "referenceAllele": "G",
          "start": 1944
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000406134.5:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000384199.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "ENSP00000384199.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247307"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1824,
          "referenceAllele": "G",
          "start": 1823
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000543555.5:c.1685del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000442697.1:p.Gly562AspfsTer7",
        "hgvsWellDefined": "ENSP00000442697.1:p.[Gly562_Leu568delinsAsp;Ala570_Val576del;Val578_Asp580del;Ile582_Val589delinsLeu;Phe591del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247173"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1921,
          "referenceAllele": "G",
          "start": 1920
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000610696.4:c.*279del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000483159.1:n.*279del"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS400534"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1921,
          "referenceAllele": "G",
          "start": 1920
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000613514.4:c.*423del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000484137.1:n.*423del"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS401778"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1922,
          "referenceAllele": "G",
          "start": 1921
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000617333.3:c.*649del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000482468.1:n.*649del"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS403437"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1921,
          "referenceAllele": "G",
          "start": 1920
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000617938.4:c.*855del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000481158.1:n.*855del"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS403700"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1923,
          "referenceAllele": "G",
          "start": 1922
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "ENST00000621359.2:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000481416.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "ENSP00000481416.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS405232"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 2008,
          "referenceAllele": "G",
          "start": 2007
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "NM_000251.2:c.1883del",
        "LRG_218t1:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "NP_000242.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "NP_000242.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006313"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1824,
          "referenceAllele": "G",
          "start": 1823
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "NM_001258281.1:c.1685del"
      ],
      "proteinEffect": {
        "hgvs": "NP_001245210.1:p.Gly562AspfsTer7",
        "hgvsWellDefined": "NP_001245210.1:p.[Gly562_Leu568delinsAsp;Ala570_Val576del;Val578_Asp580del;Ile582_Val589delinsLeu;Phe591del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS019766"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1955,
          "referenceAllele": "G",
          "start": 1954
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "XM_005264332.2:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "XP_005264389.2:p.Gly628AspfsTer7",
        "hgvsWellDefined": "XP_005264389.2:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS064175"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1955,
          "referenceAllele": "G",
          "start": 1954
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "XM_011532867.1:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "XP_011531169.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "XP_011531169.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS099893"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1955,
          "referenceAllele": "G",
          "start": 1954
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "XR_939685.1:n.1955del"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS134381"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1945,
          "referenceAllele": "G",
          "start": 1944
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "XM_005264332.4:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "XP_005264389.2:p.Gly628AspfsTer7",
        "hgvsWellDefined": "XP_005264389.2:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS535844"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1945,
          "referenceAllele": "G",
          "start": 1944
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "XM_011532867.2:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "XP_011531169.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "XP_011531169.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS551004"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1945,
          "referenceAllele": "G",
          "start": 1944
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "XR_001738747.2:n.1945del"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS589206"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1945,
          "referenceAllele": "G",
          "start": 1944
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "XR_939685.2:n.1945del"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS612357"
    },
    {
      "coordinates": [
        {
          "allele": "",
          "end": 1919,
          "referenceAllele": "G",
          "start": 1918
        }
      ],
      "gene": "http://reg.genome.network/gene/GN007325",
      "geneNCBI_id": 4436,
      "geneSymbol": "MSH2",
      "hgvs": [
        "NM_000251.3:c.1883del"
      ],
      "proteinEffect": {
        "hgvs": "NP_000242.1:p.Gly628AspfsTer7",
        "hgvsWellDefined": "NP_000242.1:p.[Gly628_Leu634delinsAsp;Ala636_Val642del;Val644_Asp646del;Ile648_Val655delinsLeu;Phe657del]"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS674763",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000233146.7:c.1883del"
          },
          "RefSeq": {
            "hgvs": "NM_000251.3:c.1883del"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000233146.2:p.Gly628AspfsTer7"
          },
          "RefSeq": {
            "hgvs": "NP_000242.1:p.Gly628AspfsTer7"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}