{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA1594263",
  "communityStandardTitle": [
    "NM_004304.5(ALK):c.2560G>A (p.Asp854Asn)"
  ],
  "externalRecords": {
    "COSMIC": [
      {
        "@id": "http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=370816",
        "active": true,
        "id": "COSM370816"
      }
    ],
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=392938[alleleid]",
        "alleleId": 392938,
        "preferredName": "NM_004304.5(ALK):c.2560G>A (p.Asp854Asn)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/404350",
        "RCV": [
          "RCV000464123",
          "RCV002451070"
        ],
        "variationId": 404350
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/2-29455242-C-T",
        "id": "2-29455242-C-T",
        "variant": "2:29455242 C / T"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr2:g.29455242C>T?assembly=hg19",
        "id": "chr2:g.29455242C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr2:g.29232376C>T?assembly=hg38",
        "id": "chr2:g.29232376C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/189078025",
        "rs": 189078025
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/2-29455242-C-T?dataset=gnomad_r2_1",
        "id": "2-29455242-C-T",
        "variant": "2:29455242 C / T"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/2-29232376-C-T?dataset=gnomad_r3",
        "id": "2-29232376-C-T",
        "variant": "2:29232376 C / T"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/2-29232376-C-T?dataset=gnomad_r4",
        "id": "2-29232376-C-T",
        "variant": "2:29232376 C / T"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "T",
          "end": 29232376,
          "referenceAllele": "C",
          "start": 29232375
        }
      ],
      "hgvs": [
        "NC_000002.12:g.29232376C>T",
        "CM000664.2:g.29232376C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000050"
    },
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "T",
          "end": 29455242,
          "referenceAllele": "C",
          "start": 29455241
        }
      ],
      "hgvs": [
        "NC_000002.11:g.29455242C>T",
        "CM000664.1:g.29455242C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000026"
    },
    {
      "chromosome": "2",
      "coordinates": [
        {
          "allele": "T",
          "end": 29308746,
          "referenceAllele": "C",
          "start": 29308745
        }
      ],
      "hgvs": [
        "NC_000002.10:g.29308746C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000002"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 694191,
          "referenceAllele": "G",
          "start": 694190
        }
      ],
      "hgvs": [
        "NG_009445.1:g.694191G>A",
        "LRG_488:g.694191G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001597"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3487,
          "referenceAllele": "G",
          "start": 3486
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000427",
      "geneNCBI_id": 238,
      "geneSymbol": "ALK",
      "hgvs": [
        "ENST00000389048.8:c.2560G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000373700.3:p.Asp854Asn",
        "hgvsWellDefined": "ENSP00000373700.3:p.Asp854Asn"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752779",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000389048.8:c.2560G>A"
          },
          "RefSeq": {
            "hgvs": "NM_004304.5:c.2560G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000373700.3:p.Asp854Asn"
          },
          "RefSeq": {
            "hgvs": "NP_004295.2:p.Asp854Asn"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3467,
          "referenceAllele": "G",
          "start": 3466
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000427",
      "geneNCBI_id": 238,
      "geneSymbol": "ALK",
      "hgvs": [
        "ENST00000389048.7:c.2560G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000373700.3:p.Asp854Asn",
        "hgvsWellDefined": "ENSP00000373700.3:p.Asp854Asn"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS274136"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1896,
          "referenceAllele": "G",
          "start": 1895
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000427",
      "geneNCBI_id": 238,
      "geneSymbol": "ALK",
      "hgvs": [
        "ENST00000618119.4:c.1429G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000482733.1:p.Asp477Asn",
        "hgvsWellDefined": "ENSP00000482733.1:p.Asp477Asn"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS403797"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645488740",
      "coordinates": [
        {
          "allele": "A",
          "end": 3512,
          "referenceAllele": "G",
          "start": 3511
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000427",
      "geneNCBI_id": 238,
      "geneSymbol": "ALK",
      "hgvs": [
        "NM_004304.4:c.2560G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_004295.2:p.Asp854Asn",
        "hgvsWellDefined": "NP_004295.2:p.Asp854Asn"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029473"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3490,
          "referenceAllele": "G",
          "start": 3489
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000427",
      "geneNCBI_id": 238,
      "geneSymbol": "ALK",
      "hgvs": [
        "XR_001738688.2:n.3490G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS589163"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645488740",
      "coordinates": [
        {
          "allele": "A",
          "end": 3487,
          "referenceAllele": "G",
          "start": 3486
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000427",
      "geneNCBI_id": 238,
      "geneSymbol": "ALK",
      "hgvs": [
        "NM_004304.5:c.2560G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_004295.2:p.Asp854Asn",
        "hgvsWellDefined": "NP_004295.2:p.Asp854Asn"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS666419",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000389048.8:c.2560G>A"
          },
          "RefSeq": {
            "hgvs": "NM_004304.5:c.2560G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000373700.3:p.Asp854Asn"
          },
          "RefSeq": {
            "hgvs": "NP_004295.2:p.Asp854Asn"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}