{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA1321809",
  "communityStandardTitle": [
    "NM_000069.3(CACNA1S):c.3112C>T (p.Arg1038Cys)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=1929699[alleleid]",
        "alleleId": 1929699,
        "preferredName": "NM_000069.3(CACNA1S):c.3112C>T (p.Arg1038Cys)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/2195332",
        "RCV": [
          "RCV002628591",
          "RCV003491260",
          "RCV004009498"
        ],
        "variationId": 2195332
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/1-201030538-G-A",
        "id": "1-201030538-G-A",
        "variant": "1:201030538 G / A"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.201030538G>A?assembly=hg19",
        "id": "chr1:g.201030538G>A"
      },
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.201030538_201030541delinsAGTT?assembly=hg19",
        "id": "chr1:g.201030538_201030541delinsAGTT"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.201061410G>A?assembly=hg38",
        "id": "chr1:g.201061410G>A"
      },
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.201061410_201061413delinsAGTT?assembly=hg38",
        "id": "chr1:g.201061410_201061413delinsAGTT"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/1473668614",
        "rs": 1473668614
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-201030538-G-A?dataset=gnomad_r2_1",
        "id": "1-201030538-G-A",
        "variant": "1:201030538 G / A"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-201061410-G-A?dataset=gnomad_r3",
        "id": "1-201061410-G-A",
        "variant": "1:201061410 G / A"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-201061410-G-A?dataset=gnomad_r4",
        "id": "1-201061410-G-A",
        "variant": "1:201061410 G / A"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "A",
          "end": 201061410,
          "referenceAllele": "G",
          "start": 201061409
        }
      ],
      "hgvs": [
        "NC_000001.11:g.201061410G>A",
        "CM000663.2:g.201061410G>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000049"
    },
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "A",
          "end": 201030538,
          "referenceAllele": "G",
          "start": 201030537
        }
      ],
      "hgvs": [
        "NC_000001.10:g.201030538G>A",
        "CM000663.1:g.201030538G>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000025"
    },
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "A",
          "end": 199297161,
          "referenceAllele": "G",
          "start": 199297160
        }
      ],
      "hgvs": [
        "NC_000001.9:g.199297161G>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000001"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 56157,
          "referenceAllele": "C",
          "start": 56156
        }
      ],
      "hgvs": [
        "NG_009816.1:g.56157C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001653"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 56157,
          "referenceAllele": "C",
          "start": 56156
        }
      ],
      "hgvs": [
        "NG_009816.2:g.56157C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS673532"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3199,
          "referenceAllele": "C",
          "start": 3198
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000362061.4:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000355192.3:p.Arg1038Cys",
        "hgvsWellDefined": "ENSP00000355192.3:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS749587",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000362061.4:c.3112C>T"
          },
          "RefSeq": {
            "hgvs": "NM_000069.3:c.3112C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000355192.3:p.Arg1038Cys"
          },
          "RefSeq": {
            "hgvs": "NP_000060.2:p.Arg1038Cys"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3478,
          "referenceAllele": "C",
          "start": 3477
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000679417.1:c.*2275C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000506706.1:n.*2275C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS779048"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 238,
          "referenceAllele": "C",
          "start": 237
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000680051.1:n.238C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS779672"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3225,
          "referenceAllele": "C",
          "start": 3224
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000680059.1:c.*630C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000504944.1:n.*630C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS779680"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3199,
          "referenceAllele": "C",
          "start": 3198
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000681078.1:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000506645.1:p.Arg1038Cys",
        "hgvsWellDefined": "ENSP00000506645.1:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS780691"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3199,
          "referenceAllele": "C",
          "start": 3198
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000681190.1:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000506428.1:p.Arg1038Cys",
        "hgvsWellDefined": "ENSP00000506428.1:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS780801"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3139,
          "referenceAllele": "C",
          "start": 3138
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000681874.1:c.3052C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000505162.1:p.Arg1018Cys",
        "hgvsWellDefined": "ENSP00000505162.1:p.Arg1018Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS781475"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3339,
          "referenceAllele": "C",
          "start": 3338
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000362061.3:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000355192.3:p.Arg1038Cys",
        "hgvsWellDefined": "ENSP00000355192.3:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247221"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3224,
          "referenceAllele": "C",
          "start": 3223
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "ENST00000367338.7:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000356307.3:p.Arg1038Cys",
        "hgvsWellDefined": "ENSP00000356307.3:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247424"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2580104272",
      "coordinates": [
        {
          "allele": "T",
          "end": 3339,
          "referenceAllele": "C",
          "start": 3338
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "NM_000069.2:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_000060.2:p.Arg1038Cys",
        "hgvsWellDefined": "NP_000060.2:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006133"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3205,
          "referenceAllele": "C",
          "start": 3204
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "XM_005245478.2:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_005245535.1:p.Arg1038Cys",
        "hgvsWellDefined": "XP_005245535.1:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS057238"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3226,
          "referenceAllele": "C",
          "start": 3225
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "XM_005245478.3:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_005245535.1:p.Arg1038Cys",
        "hgvsWellDefined": "XP_005245535.1:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS532434"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2580104272",
      "coordinates": [
        {
          "allele": "T",
          "end": 3199,
          "referenceAllele": "C",
          "start": 3198
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001397",
      "geneNCBI_id": 779,
      "geneSymbol": "CACNA1S",
      "hgvs": [
        "NM_000069.3:c.3112C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_000060.2:p.Arg1038Cys",
        "hgvsWellDefined": "NP_000060.2:p.Arg1038Cys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662308",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000362061.4:c.3112C>T"
          },
          "RefSeq": {
            "hgvs": "NM_000069.3:c.3112C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000355192.3:p.Arg1038Cys"
          },
          "RefSeq": {
            "hgvs": "NP_000060.2:p.Arg1038Cys"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}