{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA128097",
  "communityStandardTitle": [
    "NM_005359.6(SMAD4):c.1082G>A (p.Arg361His)"
  ],
  "externalRecords": {
    "COSMIC": [
      {
        "@id": "http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=14122",
        "active": true,
        "id": "COSM14122"
      }
    ],
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=36173[alleleid]",
        "alleleId": 36173,
        "preferredName": "NM_005359.6(SMAD4):c.1082G>A (p.Arg361His)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/24832",
        "RCV": [
          "RCV000421390",
          "RCV000431203",
          "RCV000419206",
          "RCV000441473",
          "RCV000434006",
          "RCV000439037",
          "RCV000423753",
          "RCV000520995",
          "RCV000431590",
          "RCV000635423",
          "RCV000763030",
          "RCV002316201",
          "RCV004018654"
        ],
        "variationId": 24832
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr18:g.48591919G>A?assembly=hg19",
        "id": "chr18:g.48591919G>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr18:g.51065549G>A?assembly=hg38",
        "id": "chr18:g.51065549G>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/377767347",
        "rs": 377767347
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "18",
      "coordinates": [
        {
          "allele": "A",
          "end": 51065549,
          "referenceAllele": "G",
          "start": 51065548
        }
      ],
      "hgvs": [
        "NC_000018.10:g.51065549G>A",
        "CM000680.2:g.51065549G>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000066"
    },
    {
      "chromosome": "18",
      "coordinates": [
        {
          "allele": "A",
          "end": 48591919,
          "referenceAllele": "G",
          "start": 48591918
        }
      ],
      "hgvs": [
        "NC_000018.9:g.48591919G>A",
        "CM000680.1:g.48591919G>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000042"
    },
    {
      "chromosome": "18",
      "coordinates": [
        {
          "allele": "A",
          "end": 46845917,
          "referenceAllele": "G",
          "start": 46845916
        }
      ],
      "hgvs": [
        "NC_000018.8:g.46845917G>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000018"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 102510,
          "referenceAllele": "G",
          "start": 102509
        }
      ],
      "hgvs": [
        "NG_013013.2:g.102510G>A",
        "LRG_318:g.102510G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS002660"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1347,
          "referenceAllele": "G",
          "start": 1346
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000588860.6:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000465878.2:p.Arg361His",
        "hgvsWellDefined": "ENSP00000465878.2:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS914337"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1386,
          "referenceAllele": "G",
          "start": 1385
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000589076.6:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000466934.2:p.Arg361His",
        "hgvsWellDefined": "ENSP00000466934.2:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS914338"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1789,
          "referenceAllele": "G",
          "start": 1788
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000589941.2:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000465874.2:p.Arg361His",
        "hgvsWellDefined": "ENSP00000465874.2:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS914340"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1205,
          "referenceAllele": "G",
          "start": 1204
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000590061.2:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000464772.2:p.Arg361His",
        "hgvsWellDefined": "ENSP00000464772.2:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS914342"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1614,
          "referenceAllele": "G",
          "start": 1613
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000593223.2:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000466118.2:p.Arg361His",
        "hgvsWellDefined": "ENSP00000466118.2:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS914349"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1209,
          "referenceAllele": "G",
          "start": 1208
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000611848.2:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000478613.2:p.Arg361His",
        "hgvsWellDefined": "ENSP00000478613.2:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS826412"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2454,
          "referenceAllele": "G",
          "start": 2453
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000684953.1:n.2454G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829809"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1533,
          "referenceAllele": "G",
          "start": 1532
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000685090.1:n.1533G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829875"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1190,
          "referenceAllele": "G",
          "start": 1189
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000685232.1:n.1190G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829955"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 333,
          "referenceAllele": "G",
          "start": 332
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000688307.1:n.333G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS831552"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1190,
          "referenceAllele": "G",
          "start": 1189
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000688574.1:n.1190G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS831698"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1296,
          "referenceAllele": "G",
          "start": 1295
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000688903.1:n.1296G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS831880"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2564,
          "referenceAllele": "G",
          "start": 2563
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000691124.1:n.2564G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS833056"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1620,
          "referenceAllele": "G",
          "start": 1619
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000342988.8:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000341551.3:p.Arg361His",
        "hgvsWellDefined": "ENSP00000341551.3:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS748110",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000342988.8:c.1082G>A"
          },
          "RefSeq": {
            "hgvs": "NM_005359.6:c.1082G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000341551.3:p.Arg361His"
          },
          "RefSeq": {
            "hgvs": "NP_005350.1:p.Arg361His"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1620,
          "referenceAllele": "G",
          "start": 1619
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000342988.7:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000341551.3:p.Arg361His",
        "hgvsWellDefined": "ENSP00000341551.3:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS261669"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1340,
          "referenceAllele": "G",
          "start": 1339
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000398417.6:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000381452.1:p.Arg361His",
        "hgvsWellDefined": "ENSP00000381452.1:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS278258"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 794,
          "referenceAllele": "G",
          "start": 793
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000588745.5:c.794G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000464901.1:p.Arg265His",
        "hgvsWellDefined": "ENSP00000464901.1:p.Arg265His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS390999"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 3083,
          "referenceAllele": "G",
          "start": 3082
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000591126.5:n.3083G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS392668"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 955,
          "endIntronDirection": "+",
          "endIntronOffset": 5633,
          "referenceAllele": "G",
          "start": 955,
          "startIntronDirection": "+",
          "startIntronOffset": 5632
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000592186.5:c.955+5633G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000468611.1:n.955+5633G>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS393389"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 282,
          "referenceAllele": "G",
          "start": 281
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "ENST00000611848.1:c.282G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS401041"
    },
    {
      "@id": "http://reg.genome.network/allele/PA128099",
      "coordinates": [
        {
          "allele": "A",
          "end": 1620,
          "referenceAllele": "G",
          "start": 1619
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "NM_005359.5:c.1082G>A",
        "LRG_318t1:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_005350.1:p.Arg361His",
        "hgvsWellDefined": "NP_005350.1:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS030461"
    },
    {
      "@id": "http://reg.genome.network/allele/PA128099",
      "coordinates": [
        {
          "allele": "A",
          "end": 1620,
          "referenceAllele": "G",
          "start": 1619
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006770",
      "geneNCBI_id": 4089,
      "geneSymbol": "SMAD4",
      "hgvs": [
        "NM_005359.6:c.1082G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_005350.1:p.Arg361His",
        "hgvsWellDefined": "NP_005350.1:p.Arg361His"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS696402",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000342988.8:c.1082G>A"
          },
          "RefSeq": {
            "hgvs": "NM_005359.6:c.1082G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000341551.3:p.Arg361His"
          },
          "RefSeq": {
            "hgvs": "NP_005350.1:p.Arg361His"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}