{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA128035",
  "communityStandardTitle": [
    "NM_000485.3(APRT):c.407T>C (p.Met136Thr)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=33335[alleleid]",
        "alleleId": 33335,
        "preferredName": "NM_000485.3(APRT):c.407T>C (p.Met136Thr)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/18296",
        "RCV": [
          "RCV000019958",
          "RCV000033908"
        ],
        "variationId": 18296
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr16:g.88876242A>G?assembly=hg19",
        "id": "chr16:g.88876242A>G"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr16:g.88809834A>G?assembly=hg38",
        "id": "chr16:g.88809834A>G"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/28999113",
        "rs": 28999113
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/16-88876242-A-G?dataset=gnomad_r2_1",
        "id": "16-88876242-A-G",
        "variant": "16:88876242 A / G"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/16-88809834-A-G?dataset=gnomad_r4",
        "id": "16-88809834-A-G",
        "variant": "16:88809834 A / G"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "16",
      "coordinates": [
        {
          "allele": "G",
          "end": 88809834,
          "referenceAllele": "A",
          "start": 88809833
        }
      ],
      "hgvs": [
        "NC_000016.10:g.88809834A>G",
        "CM000678.2:g.88809834A>G"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000064"
    },
    {
      "chromosome": "16",
      "coordinates": [
        {
          "allele": "G",
          "end": 88876242,
          "referenceAllele": "A",
          "start": 88876241
        }
      ],
      "hgvs": [
        "NC_000016.9:g.88876242A>G",
        "CM000678.1:g.88876242A>G"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000040"
    },
    {
      "chromosome": "16",
      "coordinates": [
        {
          "allele": "G",
          "end": 87403743,
          "referenceAllele": "A",
          "start": 87403742
        }
      ],
      "hgvs": [
        "NC_000016.8:g.87403743A>G"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000016"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 7101,
          "referenceAllele": "T",
          "start": 7100
        }
      ],
      "hgvs": [
        "NG_008013.1:g.7101T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000773"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 11057,
          "referenceAllele": "A",
          "start": 11056
        }
      ],
      "hgvs": [
        "NG_028266.1:g.11057A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS004160"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 436,
          "referenceAllele": "T",
          "start": 435
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000378364.8:c.407T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000367615.3:p.Met136Thr",
        "hgvsWellDefined": "ENSP00000367615.3:p.Met136Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752072",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000378364.8:c.407T>C"
          },
          "RefSeq": {
            "hgvs": "NM_000485.3:c.407T>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000367615.3:p.Met136Thr"
          },
          "RefSeq": {
            "hgvs": "NP_000476.1:p.Met136Thr"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 452,
          "referenceAllele": "T",
          "start": 451
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000378364.7:c.407T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000367615.3:p.Met136Thr",
        "hgvsWellDefined": "ENSP00000367615.3:p.Met136Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS271999"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 426,
          "endIntronDirection": "-",
          "endIntronOffset": 127,
          "referenceAllele": "T",
          "start": 426,
          "startIntronDirection": "-",
          "startIntronOffset": 128
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000426324.6:c.401-128T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000397007.2:n.401-128T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS289167"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 417,
          "referenceAllele": "T",
          "start": 416
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000562464.1:n.417T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS376813"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 347,
          "referenceAllele": "T",
          "start": 346
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000563655.5:c.326T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000456012.1:p.Met109Thr",
        "hgvsWellDefined": "ENSP00000456012.1:p.Met109Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS377567"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 199,
          "endIntronDirection": "-",
          "endIntronOffset": 127,
          "referenceAllele": "T",
          "start": 199,
          "startIntronDirection": "-",
          "startIntronOffset": 128
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000567057.5:n.200-128T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS379867"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 302,
          "referenceAllele": "T",
          "start": 301
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000567391.5:c.*81T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000457964.1:n.*81T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS380081"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 345,
          "endIntronDirection": "-",
          "endIntronOffset": 298,
          "referenceAllele": "T",
          "start": 345,
          "startIntronDirection": "-",
          "startIntronOffset": 299
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000567713.5:c.322-299T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000455749.1:n.322-299T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS380303"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 304,
          "endIntronDirection": "-",
          "endIntronOffset": 127,
          "referenceAllele": "T",
          "start": 304,
          "startIntronDirection": "-",
          "startIntronOffset": 128
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000568319.5:c.*75-128T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000456905.1:n.*75-128T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS380698"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 336,
          "referenceAllele": "T",
          "start": 335
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000568575.1:n.336T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS380881"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 472,
          "referenceAllele": "T",
          "start": 471
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "ENST00000569616.1:c.472T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS381593"
    },
    {
      "@id": "http://reg.genome.network/allele/PA113684",
      "coordinates": [
        {
          "allele": "C",
          "end": 442,
          "referenceAllele": "T",
          "start": 441
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "NM_000485.2:c.407T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000476.1:p.Met136Thr",
        "hgvsWellDefined": "NP_000476.1:p.Met136Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006539"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 435,
          "endIntronDirection": "-",
          "endIntronOffset": 127,
          "referenceAllele": "T",
          "start": 435,
          "startIntronDirection": "-",
          "startIntronOffset": 128
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "NM_001030018.1:c.401-128T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_001025189.1:n.401-128T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS008958"
    },
    {
      "@id": "http://reg.genome.network/allele/PA113684",
      "coordinates": [
        {
          "allele": "C",
          "end": 436,
          "referenceAllele": "T",
          "start": 435
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "NM_000485.3:c.407T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000476.1:p.Met136Thr",
        "hgvsWellDefined": "NP_000476.1:p.Met136Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS674864",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000378364.8:c.407T>C"
          },
          "RefSeq": {
            "hgvs": "NM_000485.3:c.407T>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000367615.3:p.Met136Thr"
          },
          "RefSeq": {
            "hgvs": "NP_000476.1:p.Met136Thr"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 429,
          "endIntronDirection": "-",
          "endIntronOffset": 127,
          "referenceAllele": "T",
          "start": 429,
          "startIntronDirection": "-",
          "startIntronOffset": 128
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000626",
      "geneNCBI_id": 353,
      "geneSymbol": "APRT",
      "hgvs": [
        "NM_001030018.2:c.401-128T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_001025189.1:n.401-128T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS675723"
    }
  ],
  "type": "nucleotide"
}