{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA115024",
  "communityStandardTitle": [
    "NM_178170.3(NEK8):c.1273C>T (p.His425Tyr)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=16527[alleleid]",
        "alleleId": 16527,
        "preferredName": "NM_178170.3(NEK8):c.1273C>T (p.His425Tyr)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/1488",
        "RCV": [
          "RCV000001553"
        ],
        "variationId": 1488
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr17:g.27065739C>T?assembly=hg19",
        "id": "chr17:g.27065739C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr17:g.28738721C>T?assembly=hg38",
        "id": "chr17:g.28738721C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/118204032",
        "rs": 118204032
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "T",
          "end": 28738721,
          "referenceAllele": "C",
          "start": 28738720
        }
      ],
      "hgvs": [
        "NC_000017.11:g.28738721C>T",
        "CM000679.2:g.28738721C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000065"
    },
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "T",
          "end": 27065739,
          "referenceAllele": "C",
          "start": 27065738
        }
      ],
      "hgvs": [
        "NC_000017.10:g.27065739C>T",
        "CM000679.1:g.27065739C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000041"
    },
    {
      "chromosome": "17",
      "coordinates": [
        {
          "allele": "T",
          "end": 24089866,
          "referenceAllele": "C",
          "start": 24089865
        }
      ],
      "hgvs": [
        "NC_000017.9:g.24089866C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000017"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 14908,
          "referenceAllele": "C",
          "start": 14907
        }
      ],
      "hgvs": [
        "NG_012263.1:g.14908C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS002330"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1299,
          "referenceAllele": "C",
          "start": 1298
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "ENST00000268766.11:c.1273C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000268766.6:p.His425Tyr",
        "hgvsWellDefined": "ENSP00000268766.6:p.His425Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS743072",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000268766.11:c.1273C>T"
          },
          "RefSeq": {
            "hgvs": "NM_178170.3:c.1273C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000268766.6:p.His425Tyr"
          },
          "RefSeq": {
            "hgvs": "NP_835464.1:p.His425Tyr"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1307,
          "referenceAllele": "C",
          "start": 1306
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "ENST00000268766.10:c.1273C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000268766.6:p.His425Tyr",
        "hgvsWellDefined": "ENSP00000268766.6:p.His425Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS252106"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1443,
          "referenceAllele": "C",
          "start": 1442
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "ENST00000543014.1:c.*50C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000465859.1:n.*50C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS363778"
    },
    {
      "@id": "http://reg.genome.network/allele/PA106004",
      "coordinates": [
        {
          "allele": "T",
          "end": 1273,
          "referenceAllele": "C",
          "start": 1272
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "NM_178170.2:c.1273C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_835464.1:p.His425Tyr",
        "hgvsWellDefined": "NP_835464.1:p.His425Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS043469"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1516,
          "referenceAllele": "C",
          "start": 1515
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524638.1:c.1384C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522940.1:p.His462Tyr",
        "hgvsWellDefined": "XP_011522940.1:p.His462Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS091759"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1367,
          "referenceAllele": "C",
          "start": 1366
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524639.1:c.1357C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522941.1:p.His453Tyr",
        "hgvsWellDefined": "XP_011522941.1:p.His453Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS091760"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1477,
          "referenceAllele": "C",
          "start": 1476
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524640.1:c.1345C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522942.1:p.His449Tyr",
        "hgvsWellDefined": "XP_011522942.1:p.His449Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS091761"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1411,
          "referenceAllele": "C",
          "start": 1410
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524641.1:c.1240C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522943.1:p.His414Tyr",
        "hgvsWellDefined": "XP_011522943.1:p.His414Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS091762"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1386,
          "referenceAllele": "C",
          "start": 1385
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524642.1:c.1240C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522944.1:p.His414Tyr",
        "hgvsWellDefined": "XP_011522944.1:p.His414Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS091763"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1381,
          "referenceAllele": "C",
          "start": 1380
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524643.1:c.1240C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522945.1:p.His414Tyr",
        "hgvsWellDefined": "XP_011522945.1:p.His414Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS091764"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1305,
          "referenceAllele": "C",
          "start": 1304
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524644.1:c.1063C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522946.1:p.His355Tyr",
        "hgvsWellDefined": "XP_011522946.1:p.His355Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS091765"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1639,
          "referenceAllele": "C",
          "start": 1638
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524645.1:c.*46C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522947.1:n.*46C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS091766"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1557,
          "referenceAllele": "C",
          "start": 1556
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XR_934448.1:n.1557C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS129769"
    },
    {
      "@id": "http://reg.genome.network/allele/PA106004",
      "coordinates": [
        {
          "allele": "T",
          "end": 1299,
          "referenceAllele": "C",
          "start": 1298
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "NM_178170.3:c.1273C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_835464.1:p.His425Tyr",
        "hgvsWellDefined": "NP_835464.1:p.His425Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS526827",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000268766.11:c.1273C>T"
          },
          "RefSeq": {
            "hgvs": "NM_178170.3:c.1273C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000268766.6:p.His425Tyr"
          },
          "RefSeq": {
            "hgvs": "NP_835464.1:p.His425Tyr"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1516,
          "referenceAllele": "C",
          "start": 1515
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524638.3:c.1384C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522940.1:p.His462Tyr",
        "hgvsWellDefined": "XP_011522940.1:p.His462Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS547543"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1477,
          "referenceAllele": "C",
          "start": 1476
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_011524640.3:c.1345C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011522942.1:p.His449Tyr",
        "hgvsWellDefined": "XP_011522942.1:p.His449Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS547544"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1322,
          "referenceAllele": "C",
          "start": 1321
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_017024499.2:c.1312C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016879988.1:p.His438Tyr",
        "hgvsWellDefined": "XP_016879988.1:p.His438Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS575058"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1358,
          "referenceAllele": "C",
          "start": 1357
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_017024500.2:c.1195C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016879989.1:p.His399Tyr",
        "hgvsWellDefined": "XP_016879989.1:p.His399Tyr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS575059"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1633,
          "referenceAllele": "C",
          "start": 1632
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XM_017024501.1:c.*46C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016879990.1:n.*46C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS575060"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1512,
          "referenceAllele": "C",
          "start": 1511
        }
      ],
      "gene": "http://reg.genome.network/gene/GN013387",
      "geneNCBI_id": 284086,
      "geneSymbol": "NEK8",
      "hgvs": [
        "XR_001752497.2:n.1512C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS599190"
    }
  ],
  "type": "nucleotide"
}