{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA10620306",
  "communityStandardTitle": [
    "NM_004744.5(LRAT):c.*98C>T"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=297377[alleleid]",
        "alleleId": 297377,
        "preferredName": "NM_004744.5(LRAT):c.*98C>T"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/347852",
        "RCV": [
          "RCV000277933",
          "RCV000333107",
          "RCV000354005",
          "RCV001090045"
        ],
        "variationId": 347852
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr4:g.155670386C>T?assembly=hg19",
        "id": "chr4:g.155670386C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr4:g.154749234C>T?assembly=hg38",
        "id": "chr4:g.154749234C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/529360609",
        "rs": 529360609
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/4-155670386-C-T?dataset=gnomad_r2_1",
        "id": "4-155670386-C-T",
        "variant": "4:155670386 C / T"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/4-154749234-C-T?dataset=gnomad_r3",
        "id": "4-154749234-C-T",
        "variant": "4:154749234 C / T"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/4-154749234-C-T?dataset=gnomad_r4",
        "id": "4-154749234-C-T",
        "variant": "4:154749234 C / T"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "4",
      "coordinates": [
        {
          "allele": "T",
          "end": 154749234,
          "referenceAllele": "C",
          "start": 154749233
        }
      ],
      "hgvs": [
        "NC_000004.12:g.154749234C>T",
        "CM000666.2:g.154749234C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000052"
    },
    {
      "chromosome": "4",
      "coordinates": [
        {
          "allele": "T",
          "end": 155670386,
          "referenceAllele": "C",
          "start": 155670385
        }
      ],
      "hgvs": [
        "NC_000004.11:g.155670386C>T",
        "CM000666.1:g.155670386C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000028"
    },
    {
      "chromosome": "4",
      "coordinates": [
        {
          "allele": "T",
          "end": 155889836,
          "referenceAllele": "C",
          "start": 155889835
        }
      ],
      "hgvs": [
        "NC_000004.10:g.155889836C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000004"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 10224,
          "referenceAllele": "C",
          "start": 10223
        }
      ],
      "hgvs": [
        "NG_009110.1:g.10224C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001443"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1015,
          "referenceAllele": "C",
          "start": 1014
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "ENST00000336356.4:c.*98C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000337224.3:n.*98C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS747577",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000336356.4:c.*98C>T"
          },
          "RefSeq": {
            "hgvs": "NM_004744.5:c.*98C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000337224.3:n.*98C>T"
          },
          "RefSeq": {
            "hgvs": "NP_004735.2:n.*98C>T"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1044,
          "referenceAllele": "C",
          "start": 1043
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "ENST00000336356.3:c.*98C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000337224.3:n.*98C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS260291"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 586,
          "referenceAllele": "C",
          "start": 585
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "ENST00000502474.5:n.586C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS335024"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 853,
          "referenceAllele": "C",
          "start": 852
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "ENST00000507827.5:c.*98C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000426761.1:n.*98C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS339012"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1118,
          "referenceAllele": "C",
          "start": 1117
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "ENST00000510733.1:n.1118C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS341160"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 850,
          "referenceAllele": "C",
          "start": 849
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "NM_001301645.1:c.*98C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001288574.1:n.*98C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS025197"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1044,
          "referenceAllele": "C",
          "start": 1043
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "NM_004744.4:c.*98C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_004735.2:n.*98C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS029892"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1130,
          "referenceAllele": "C",
          "start": 1129
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "XM_006714412.2:c.*98C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_006714475.1:n.*98C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS070645"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1327,
          "referenceAllele": "C",
          "start": 1326
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "XR_938793.1:n.1327C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS133491"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1015,
          "referenceAllele": "C",
          "start": 1014
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "NM_004744.5:c.*98C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_004735.2:n.*98C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS666630",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000336356.4:c.*98C>T"
          },
          "RefSeq": {
            "hgvs": "NM_004744.5:c.*98C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000337224.3:n.*98C>T"
          },
          "RefSeq": {
            "hgvs": "NP_004735.2:n.*98C>T"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 853,
          "referenceAllele": "C",
          "start": 852
        }
      ],
      "gene": "http://reg.genome.network/gene/GN006685",
      "geneNCBI_id": 9227,
      "geneSymbol": "LRAT",
      "hgvs": [
        "NM_001301645.2:c.*98C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001288574.1:n.*98C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS716961"
    }
  ],
  "type": "nucleotide"
}