{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA10603575",
  "communityStandardTitle": [
    "NM_000444.6(PHEX):c.1601C>T (p.Pro534Leu)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=264997[alleleid]",
        "alleleId": 264997,
        "preferredName": "NM_000444.6(PHEX):c.1601C>T (p.Pro534Leu)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/280076",
        "RCV": [
          "RCV000260839",
          "RCV000505461",
          "RCV001843504"
        ],
        "variationId": 280076
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22208575C>T?assembly=hg19",
        "id": "chrX:g.22208575C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chrX:g.22190458C>T?assembly=hg38",
        "id": "chrX:g.22190458C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/886041363",
        "rs": 886041363
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/X-22190458-C-T?dataset=gnomad_r4",
        "id": "X-22190458-C-T",
        "variant": "X:22190458 C / T"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 22190458,
          "referenceAllele": "C",
          "start": 22190457
        }
      ],
      "hgvs": [
        "NC_000023.11:g.22190458C>T",
        "CM000685.2:g.22190458C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000071"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 22208575,
          "referenceAllele": "C",
          "start": 22208574
        }
      ],
      "hgvs": [
        "NC_000023.10:g.22208575C>T",
        "CM000685.1:g.22208575C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000047"
    },
    {
      "chromosome": "X",
      "coordinates": [
        {
          "allele": "T",
          "end": 22118496,
          "referenceAllele": "C",
          "start": 22118495
        }
      ],
      "hgvs": [
        "NC_000023.9:g.22118496C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000023"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 162655,
          "referenceAllele": "C",
          "start": 162654
        }
      ],
      "hgvs": [
        "NG_007563.2:g.162655C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000650"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 289,
          "referenceAllele": "C",
          "start": 288
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000682888.1:c.155C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508003.1:p.Pro52Leu",
        "hgvsWellDefined": "ENSP00000508003.1:p.Pro52Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS827876"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 362,
          "referenceAllele": "C",
          "start": 361
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683162.1:c.155C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508059.1:p.Pro52Leu",
        "hgvsWellDefined": "ENSP00000508059.1:p.Pro52Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828146"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 473,
          "referenceAllele": "C",
          "start": 472
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683289.1:c.155C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000508195.1:p.Pro52Leu",
        "hgvsWellDefined": "ENSP00000508195.1:p.Pro52Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS828270"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 385,
          "referenceAllele": "C",
          "start": 384
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000683917.1:n.385C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828883"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 433,
          "referenceAllele": "C",
          "start": 432
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684356.1:c.155C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000507619.1:p.Pro52Leu",
        "hgvsWellDefined": "ENSP00000507619.1:p.Pro52Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS829311"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1275,
          "referenceAllele": "C",
          "start": 1274
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000684745.1:n.1275C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS829696"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2282,
          "referenceAllele": "C",
          "start": 2281
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.5:c.1601C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Pro534Leu",
        "hgvsWellDefined": "ENSP00000368682.4:p.Pro534Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS752217",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1601C>T"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1601C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Pro534Leu"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Pro534Leu"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2166,
          "referenceAllele": "C",
          "start": 2165
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "ENST00000379374.4:c.1601C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000368682.4:p.Pro534Leu",
        "hgvsWellDefined": "ENSP00000368682.4:p.Pro534Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS272467"
    },
    {
      "@id": "http://reg.genome.network/allele/PA110040",
      "coordinates": [
        {
          "allele": "T",
          "end": 2163,
          "referenceAllele": "C",
          "start": 2162
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.5:c.1601C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Pro534Leu",
        "hgvsWellDefined": "NP_000435.3:p.Pro534Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006506"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013947",
      "coordinates": [
        {
          "allele": "T",
          "end": 2163,
          "referenceAllele": "C",
          "start": 2162
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.1:c.1601C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Pro534Leu",
        "hgvsWellDefined": "NP_001269683.1:p.Pro534Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS022224"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 972,
          "referenceAllele": "C",
          "start": 971
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545533.1:c.845C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543835.1:p.Pro282Leu",
        "hgvsWellDefined": "XP_011543835.1:p.Pro282Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112433"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1001,
          "referenceAllele": "C",
          "start": 1000
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545534.1:c.845C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543836.1:p.Pro282Leu",
        "hgvsWellDefined": "XP_011543836.1:p.Pro282Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112434"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 623,
          "referenceAllele": "C",
          "start": 622
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.1:c.494C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Pro165Leu",
        "hgvsWellDefined": "XP_011543838.1:p.Pro165Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS112436"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1005,
          "referenceAllele": "C",
          "start": 1004
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_011545536.2:c.494C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011543838.1:p.Pro165Leu",
        "hgvsWellDefined": "XP_011543838.1:p.Pro165Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS556129"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 973,
          "referenceAllele": "C",
          "start": 972
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_017029579.1:c.845C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016885068.1:p.Pro282Leu",
        "hgvsWellDefined": "XP_016885068.1:p.Pro282Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS579097"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 1703,
          "referenceAllele": "C",
          "start": 1702
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XM_024452390.1:c.1310C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_024308158.1:p.Pro437Leu",
        "hgvsWellDefined": "XP_024308158.1:p.Pro437Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS585885"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2441,
          "referenceAllele": "C",
          "start": 2440
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "XR_001755695.1:n.2441C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS601328"
    },
    {
      "@id": "http://reg.genome.network/allele/PA110040",
      "coordinates": [
        {
          "allele": "T",
          "end": 2282,
          "referenceAllele": "C",
          "start": 2281
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_000444.6:c.1601C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_000435.3:p.Pro534Leu",
        "hgvsWellDefined": "NP_000435.3:p.Pro534Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS662448",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000379374.5:c.1601C>T"
          },
          "RefSeq": {
            "hgvs": "NM_000444.6:c.1601C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000368682.4:p.Pro534Leu"
          },
          "RefSeq": {
            "hgvs": "NP_000435.3:p.Pro534Leu"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA916013947",
      "coordinates": [
        {
          "allele": "T",
          "end": 2282,
          "referenceAllele": "C",
          "start": 2281
        }
      ],
      "gene": "http://reg.genome.network/gene/GN008918",
      "geneNCBI_id": 5251,
      "geneSymbol": "PHEX",
      "hgvs": [
        "NM_001282754.2:c.1601C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001269683.1:p.Pro534Leu",
        "hgvsWellDefined": "NP_001269683.1:p.Pro534Leu"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS681890"
    }
  ],
  "type": "nucleotide"
}