{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA10581269",
  "communityStandardTitle": [
    "NM_000448.3(RAG1):c.2005G>A (p.Glu669Lys)"
  ],
  "externalRecords": {
    "COSMIC": [
      {
        "@id": "http://cancer.sanger.ac.uk/cosmic/mutation/overview?id=3447062",
        "active": true,
        "id": "COSM3447062"
      }
    ],
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=236984[alleleid]",
        "alleleId": 236984,
        "preferredName": "NM_000448.3(RAG1):c.2005G>A (p.Glu669Lys)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/235297",
        "RCV": [
          "RCV000223999",
          "RCV003765454"
        ],
        "variationId": 235297
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr11:g.36596859G>A?assembly=hg19",
        "id": "chr11:g.36596859G>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr11:g.36575309G>A?assembly=hg38",
        "id": "chr11:g.36575309G>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/878853004",
        "rs": 878853004
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/11-36575309-G-A?dataset=gnomad_r4",
        "id": "11-36575309-G-A",
        "variant": "11:36575309 G / A"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "A",
          "end": 36575309,
          "referenceAllele": "G",
          "start": 36575308
        }
      ],
      "hgvs": [
        "NC_000011.10:g.36575309G>A",
        "CM000673.2:g.36575309G>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000059"
    },
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "A",
          "end": 36596859,
          "referenceAllele": "G",
          "start": 36596858
        }
      ],
      "hgvs": [
        "NC_000011.9:g.36596859G>A",
        "CM000673.1:g.36596859G>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000035"
    },
    {
      "chromosome": "11",
      "coordinates": [
        {
          "allele": "A",
          "end": 36553435,
          "referenceAllele": "G",
          "start": 36553434
        }
      ],
      "hgvs": [
        "NC_000011.8:g.36553435G>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000011"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 12297,
          "referenceAllele": "G",
          "start": 12296
        }
      ],
      "hgvs": [
        "NG_007528.1:g.12297G>A",
        "LRG_98:g.12297G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000636"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2301,
          "referenceAllele": "G",
          "start": 2300
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000697713.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513411.1:p.Glu669Lys",
        "hgvsWellDefined": "ENSP00000513411.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908925"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2185,
          "referenceAllele": "G",
          "start": 2184
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000697714.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513412.1:p.Glu669Lys",
        "hgvsWellDefined": "ENSP00000513412.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908926"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2428,
          "referenceAllele": "G",
          "start": 2427
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000697715.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513413.1:p.Glu669Lys",
        "hgvsWellDefined": "ENSP00000513413.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS908927"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2135,
          "referenceAllele": "G",
          "start": 2134
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000299440.6:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000299440.5:p.Glu669Lys",
        "hgvsWellDefined": "ENSP00000299440.5:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS744676",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000299440.6:c.2005G>A"
          },
          "RefSeq": {
            "hgvs": "NM_000448.3:c.2005G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000299440.5:p.Glu669Lys"
          },
          "RefSeq": {
            "hgvs": "NP_000439.2:p.Glu669Lys"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2117,
          "referenceAllele": "G",
          "start": 2116
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000299440.5:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000299440.5:p.Glu669Lys",
        "hgvsWellDefined": "ENSP00000299440.5:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS254725"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2641,
          "referenceAllele": "G",
          "start": 2640
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "ENST00000534663.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000434610.1:p.Glu669Lys",
        "hgvsWellDefined": "ENSP00000434610.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS359238"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645426681",
      "coordinates": [
        {
          "allele": "A",
          "end": 2129,
          "referenceAllele": "G",
          "start": 2128
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_000448.2:c.2005G>A",
        "LRG_98t1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000439.1:p.Glu669Lys",
        "hgvsWellDefined": "NP_000439.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006510"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2157,
          "referenceAllele": "G",
          "start": 2156
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_005253041.3:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005253098.1:p.Glu669Lys",
        "hgvsWellDefined": "XP_005253098.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS060133"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2271,
          "referenceAllele": "G",
          "start": 2270
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_011520250.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011518552.1:p.Glu669Lys",
        "hgvsWellDefined": "XP_011518552.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS087419"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2369,
          "referenceAllele": "G",
          "start": 2368
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_011520251.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011518553.1:p.Glu669Lys",
        "hgvsWellDefined": "XP_011518553.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS087420"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2191,
          "referenceAllele": "G",
          "start": 2190
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_005253041.4:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_005253098.1:p.Glu669Lys",
        "hgvsWellDefined": "XP_005253098.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS533889"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2305,
          "referenceAllele": "G",
          "start": 2304
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "XM_011520250.2:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011518552.1:p.Glu669Lys",
        "hgvsWellDefined": "XP_011518552.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS545657"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825177541",
      "coordinates": [
        {
          "allele": "A",
          "end": 2135,
          "referenceAllele": "G",
          "start": 2134
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_000448.3:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_000439.2:p.Glu669Lys",
        "hgvsWellDefined": "NP_000439.2:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS674851",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000299440.6:c.2005G>A"
          },
          "RefSeq": {
            "hgvs": "NM_000448.3:c.2005G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000299440.5:p.Glu669Lys"
          },
          "RefSeq": {
            "hgvs": "NP_000439.2:p.Glu669Lys"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2828706896",
      "coordinates": [
        {
          "allele": "A",
          "end": 2478,
          "referenceAllele": "G",
          "start": 2477
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_001377277.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001364206.1:p.Glu669Lys",
        "hgvsWellDefined": "NP_001364206.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS695063"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2828707577",
      "coordinates": [
        {
          "allele": "A",
          "end": 2416,
          "referenceAllele": "G",
          "start": 2415
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_001377278.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001364207.1:p.Glu669Lys",
        "hgvsWellDefined": "NP_001364207.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS695064"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2828708259",
      "coordinates": [
        {
          "allele": "A",
          "end": 2318,
          "referenceAllele": "G",
          "start": 2317
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_001377279.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001364208.1:p.Glu669Lys",
        "hgvsWellDefined": "NP_001364208.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS695065"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2573074421",
      "coordinates": [
        {
          "allele": "A",
          "end": 2204,
          "referenceAllele": "G",
          "start": 2203
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009831",
      "geneNCBI_id": 5896,
      "geneSymbol": "RAG1",
      "hgvs": [
        "NM_001377280.1:c.2005G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001364209.1:p.Glu669Lys",
        "hgvsWellDefined": "NP_001364209.1:p.Glu669Lys"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS695066"
    }
  ],
  "type": "nucleotide"
}