{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA1023873",
  "communityStandardTitle": [
    "NM_001232.4(CASQ2):c.533-12T>G"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=864963[alleleid]",
        "alleleId": 864963,
        "preferredName": "NM_001232.4(CASQ2):c.533-12T>G"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/876074",
        "RCV": [
          "RCV001100488",
          "RCV003638739"
        ],
        "variationId": 876074
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/1-116275607-A-C",
        "id": "1-116275607-A-C",
        "variant": "1:116275607 A / C"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.116275607A>C?assembly=hg19",
        "id": "chr1:g.116275607A>C"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr1:g.115732986A>C?assembly=hg38",
        "id": "chr1:g.115732986A>C"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/774246167",
        "rs": 774246167
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-116275607-A-C?dataset=gnomad_r2_1",
        "id": "1-116275607-A-C",
        "variant": "1:116275607 A / C"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-115732986-A-C?dataset=gnomad_r3",
        "id": "1-115732986-A-C",
        "variant": "1:115732986 A / C"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/1-115732986-A-C?dataset=gnomad_r4",
        "id": "1-115732986-A-C",
        "variant": "1:115732986 A / C"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "C",
          "end": 115732986,
          "referenceAllele": "A",
          "start": 115732985
        }
      ],
      "hgvs": [
        "NC_000001.11:g.115732986A>C",
        "CM000663.2:g.115732986A>C"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000049"
    },
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "C",
          "end": 116275607,
          "referenceAllele": "A",
          "start": 116275606
        }
      ],
      "hgvs": [
        "NC_000001.10:g.116275607A>C",
        "CM000663.1:g.116275607A>C"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000025"
    },
    {
      "chromosome": "1",
      "coordinates": [
        {
          "allele": "C",
          "end": 116077130,
          "referenceAllele": "A",
          "start": 116077129
        }
      ],
      "hgvs": [
        "NC_000001.9:g.116077130A>C"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000001"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 40820,
          "referenceAllele": "T",
          "start": 40819
        }
      ],
      "hgvs": [
        "NG_008802.1:g.40820T>G",
        "LRG_404:g.40820T>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS001221"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 528,
          "endIntronDirection": "-",
          "endIntronOffset": 11,
          "referenceAllele": "T",
          "start": 528,
          "startIntronDirection": "-",
          "startIntronOffset": 12
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001513",
      "geneNCBI_id": 845,
      "geneSymbol": "CASQ2",
      "hgvs": [
        "ENST00000488931.2:c.257-12T>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000518226.1:n.257-12T>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS914156"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 705,
          "endIntronDirection": "-",
          "endIntronOffset": 11,
          "referenceAllele": "T",
          "start": 705,
          "startIntronDirection": "-",
          "startIntronOffset": 12
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001513",
      "geneNCBI_id": 845,
      "geneSymbol": "CASQ2",
      "hgvs": [
        "ENST00000261448.6:c.533-12T>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000261448.5:n.533-12T>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS742143",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000261448.6:c.533-12T>G"
          },
          "RefSeq": {
            "hgvs": "NM_001232.4:c.533-12T>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000261448.5:n.533-12T>G"
          },
          "RefSeq": {
            "hgvs": "NP_001223.2:n.533-12T>G"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 772,
          "endIntronDirection": "-",
          "endIntronOffset": 11,
          "referenceAllele": "T",
          "start": 772,
          "startIntronDirection": "-",
          "startIntronOffset": 12
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001513",
      "geneNCBI_id": 845,
      "geneSymbol": "CASQ2",
      "hgvs": [
        "ENST00000261448.5:c.533-12T>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000261448.5:n.533-12T>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS250751"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 796,
          "endIntronDirection": "-",
          "endIntronOffset": 11,
          "referenceAllele": "T",
          "start": 796,
          "startIntronDirection": "-",
          "startIntronOffset": 12
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001513",
      "geneNCBI_id": 845,
      "geneSymbol": "CASQ2",
      "hgvs": [
        "NM_001232.3:c.533-12T>G",
        "LRG_404t1:c.533-12T>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001223.2:n.533-12T>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS018048"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 705,
          "endIntronDirection": "-",
          "endIntronOffset": 11,
          "referenceAllele": "T",
          "start": 705,
          "startIntronDirection": "-",
          "startIntronOffset": 12
        }
      ],
      "gene": "http://reg.genome.network/gene/GN001513",
      "geneNCBI_id": 845,
      "geneSymbol": "CASQ2",
      "hgvs": [
        "NM_001232.4:c.533-12T>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001223.2:n.533-12T>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS714296",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000261448.6:c.533-12T>G"
          },
          "RefSeq": {
            "hgvs": "NM_001232.4:c.533-12T>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000261448.5:n.533-12T>G"
          },
          "RefSeq": {
            "hgvs": "NP_001223.2:n.533-12T>G"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}