{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA10067186",
  "communityStandardTitle": [
    "NM_001379500.1(COL18A1):c.2577+9C>T"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=337008[alleleid]",
        "alleleId": 337008,
        "preferredName": "NM_001379500.1(COL18A1):c.2577+9C>T"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/340248",
        "RCV": [
          "RCV000352501",
          "RCV002057773"
        ],
        "variationId": 340248
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/21-46916491-C-T",
        "id": "21-46916491-C-T",
        "variant": "21:46916491 C / T"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr21:g.46916491C>T?assembly=hg19",
        "id": "chr21:g.46916491C>T"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr21:g.45496577C>T?assembly=hg38",
        "id": "chr21:g.45496577C>T"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/774784084",
        "rs": 774784084
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/21-46916491-C-T?dataset=gnomad_r2_1",
        "id": "21-46916491-C-T",
        "variant": "21:46916491 C / T"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/21-45496577-C-T?dataset=gnomad_r3",
        "id": "21-45496577-C-T",
        "variant": "21:45496577 C / T"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/21-45496577-C-T?dataset=gnomad_r4",
        "id": "21-45496577-C-T",
        "variant": "21:45496577 C / T"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "21",
      "coordinates": [
        {
          "allele": "T",
          "end": 45496577,
          "referenceAllele": "C",
          "start": 45496576
        }
      ],
      "hgvs": [
        "NC_000021.9:g.45496577C>T",
        "CM000683.2:g.45496577C>T"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000069"
    },
    {
      "chromosome": "21",
      "coordinates": [
        {
          "allele": "T",
          "end": 46916491,
          "referenceAllele": "C",
          "start": 46916490
        }
      ],
      "hgvs": [
        "NC_000021.8:g.46916491C>T",
        "CM000683.1:g.46916491C>T"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000045"
    },
    {
      "chromosome": "21",
      "coordinates": [
        {
          "allele": "T",
          "end": 45740919,
          "referenceAllele": "C",
          "start": 45740918
        }
      ],
      "hgvs": [
        "NC_000021.7:g.45740919C>T"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000021"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 96395,
          "referenceAllele": "C",
          "start": 96394
        }
      ],
      "hgvs": [
        "NG_011903.1:g.96395C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS002052"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3126,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 3126,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000355480.10:c.3117+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000347665.5:n.3117+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS748674"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2643,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 2643,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000651438.1:c.2577+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000498485.1:n.2577+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS771668",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000651438.1:c.2577+9C>T"
          },
          "RefSeq": {
            "hgvs": "NM_001379500.1:c.2577+9C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000498485.1:n.2577+9C>T"
          },
          "RefSeq": {
            "hgvs": "NP_001366429.1:n.2577+9C>T"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 618,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 618,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000342220.9:c.618+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000339118.5:n.618+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS261507"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3159,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 3159,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000355480.9:c.3117+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000347665.5:n.3117+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS263444"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3822,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 3822,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000359759.8:c.3822+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000352798.4:n.3822+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS264897"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2671,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 2671,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000400337.6:c.2577+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000383191.2:n.2577+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS278999"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 764,
          "endIntronDirection": "-",
          "endIntronOffset": 197,
          "referenceAllele": "G",
          "start": 764,
          "startIntronDirection": "-",
          "startIntronOffset": 198
        }
      ],
      "gene": "http://reg.genome.network/gene/GN010937",
      "geneNCBI_id": 6573,
      "geneSymbol": "SLC19A1",
      "hgvs": [
        "ENST00000417954.5:c.765-198G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS285163"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 331,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 331,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "ENST00000459895.1:n.331+9C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS304759"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3138,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 3138,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_030582.3:c.3117+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_085059.2:n.3117+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS038334"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3843,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 3843,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_130444.2:c.3822+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_569711.2:n.3822+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS040368"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2671,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 2671,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_130445.3:c.2577+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_569712.2:n.2577+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS040369"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3126,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 3126,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_030582.4:c.3117+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_085059.2:n.3117+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS670969"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 3831,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 3831,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_130444.3:c.3822+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_569711.2:n.3822+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS671793"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2643,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 2643,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_130445.4:c.2577+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_569712.2:n.2577+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS671794"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 2643,
          "endIntronDirection": "+",
          "endIntronOffset": 9,
          "referenceAllele": "C",
          "start": 2643,
          "startIntronDirection": "+",
          "startIntronOffset": 8
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002195",
      "geneNCBI_id": 80781,
      "geneSymbol": "COL18A1",
      "hgvs": [
        "NM_001379500.1:c.2577+9C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_001366429.1:n.2577+9C>T"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS722006",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000651438.1:c.2577+9C>T"
          },
          "RefSeq": {
            "hgvs": "NM_001379500.1:c.2577+9C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000498485.1:n.2577+9C>T"
          },
          "RefSeq": {
            "hgvs": "NP_001366429.1:n.2577+9C>T"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}