{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA036557",
  "communityStandardTitle": [
    "NM_020975.6(RET):c.1915G>A (p.Ala639Thr)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=240795[alleleid]",
        "alleleId": 240795,
        "preferredName": "NM_020975.6(RET):c.1915G>A (p.Ala639Thr)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/241341",
        "RCV": [
          "RCV000226795",
          "RCV000410332",
          "RCV000409197",
          "RCV000679725",
          "RCV001013684",
          "RCV003469160"
        ],
        "variationId": 241341
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/10-43609963-G-A",
        "id": "10-43609963-G-A",
        "variant": "10:43609963 G / A"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr10:g.43609963G>A?assembly=hg19",
        "id": "chr10:g.43609963G>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr10:g.43114515G>A?assembly=hg38",
        "id": "chr10:g.43114515G>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/777122776",
        "rs": 777122776
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/10-43609963-G-A?dataset=gnomad_r2_1",
        "id": "10-43609963-G-A",
        "variant": "10:43609963 G / A"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/10-43114515-G-A?dataset=gnomad_r3",
        "id": "10-43114515-G-A",
        "variant": "10:43114515 G / A"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/10-43114515-G-A?dataset=gnomad_r4",
        "id": "10-43114515-G-A",
        "variant": "10:43114515 G / A"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "10",
      "coordinates": [
        {
          "allele": "A",
          "end": 43114515,
          "referenceAllele": "G",
          "start": 43114514
        }
      ],
      "hgvs": [
        "NC_000010.11:g.43114515G>A",
        "CM000672.2:g.43114515G>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000058"
    },
    {
      "chromosome": "10",
      "coordinates": [
        {
          "allele": "A",
          "end": 43609963,
          "referenceAllele": "G",
          "start": 43609962
        }
      ],
      "hgvs": [
        "NC_000010.10:g.43609963G>A",
        "CM000672.1:g.43609963G>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000034"
    },
    {
      "chromosome": "10",
      "coordinates": [
        {
          "allele": "A",
          "end": 42929969,
          "referenceAllele": "G",
          "start": 42929968
        }
      ],
      "hgvs": [
        "NC_000010.9:g.42929969G>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000010"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 42447,
          "referenceAllele": "G",
          "start": 42446
        }
      ],
      "hgvs": [
        "NG_007489.1:g.42447G>A",
        "LRG_518:g.42447G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000611"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1692,
          "referenceAllele": "G",
          "start": 1691
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000615310.5:c.1519G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000480088.2:p.Ala507Thr",
        "hgvsWellDefined": "ENSP00000480088.2:p.Ala507Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS826472"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1489,
          "referenceAllele": "G",
          "start": 1488
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000683007.1:n.1489G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS827994"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1480,
          "referenceAllele": "G",
          "start": 1479
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000683872.1:n.1480G>A"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS828839"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2105,
          "referenceAllele": "G",
          "start": 2104
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000340058.6:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000344798.4:p.Ala639Thr",
        "hgvsWellDefined": "ENSP00000344798.4:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS747868"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2105,
          "referenceAllele": "G",
          "start": 2104
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000355710.8:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000347942.3:p.Ala639Thr",
        "hgvsWellDefined": "ENSP00000347942.3:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS748710",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000355710.8:c.1915G>A"
          },
          "RefSeq": {
            "hgvs": "NM_020975.6:c.1915G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000347942.3:p.Ala639Thr"
          },
          "RefSeq": {
            "hgvs": "NP_066124.1:p.Ala639Thr"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1472,
          "referenceAllele": "G",
          "start": 1471
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000671844.1:c.*509G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000500541.1:n.*509G>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS773184"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 915,
          "referenceAllele": "G",
          "start": 914
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000672389.1:c.*509G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000500252.1:n.*509G>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS773367"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2095,
          "referenceAllele": "G",
          "start": 2094
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000340058.5:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000344798.4:p.Ala639Thr",
        "hgvsWellDefined": "ENSP00000344798.4:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247408"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2147,
          "referenceAllele": "G",
          "start": 2146
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000355710.7:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000347942.3:p.Ala639Thr",
        "hgvsWellDefined": "ENSP00000347942.3:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247251"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 651,
          "referenceAllele": "G",
          "start": 650
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000498820.5:c.466G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000419080.1:p.Ala156Thr",
        "hgvsWellDefined": "ENSP00000419080.1:p.Ala156Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247185"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 1479,
          "endIntronDirection": "+",
          "endIntronOffset": 3283,
          "referenceAllele": "G",
          "start": 1479,
          "startIntronDirection": "+",
          "startIntronOffset": 3282
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "ENST00000615310.4:c.1289+3283G>A"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000480088.1:n.1289+3283G>A"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS402558"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829941632",
      "coordinates": [
        {
          "allele": "A",
          "end": 2105,
          "referenceAllele": "G",
          "start": 2104
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "NM_020630.4:c.1915G>A",
        "LRG_518t2:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_065681.1:p.Ala639Thr",
        "hgvsWellDefined": "NP_065681.1:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS036456"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645450872",
      "coordinates": [
        {
          "allele": "A",
          "end": 2105,
          "referenceAllele": "G",
          "start": 2104
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "NM_020975.4:c.1915G>A",
        "LRG_518t1:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_066124.1:p.Ala639Thr",
        "hgvsWellDefined": "NP_066124.1:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS036733"
    },
    {
      "coordinates": [
        {
          "allele": "A",
          "end": 2147,
          "referenceAllele": "G",
          "start": 2146
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "XM_011540027.1:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "XP_011538329.1:p.Ala639Thr",
        "hgvsWellDefined": "XP_011538329.1:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS106977"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2828047681",
      "coordinates": [
        {
          "allele": "A",
          "end": 1510,
          "referenceAllele": "G",
          "start": 1509
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "NM_001355216.1:c.1153G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_001342145.1:p.Ala385Thr",
        "hgvsWellDefined": "NP_001342145.1:p.Ala385Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS522845"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829941632",
      "coordinates": [
        {
          "allele": "A",
          "end": 2147,
          "referenceAllele": "G",
          "start": 2146
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "NM_020630.5:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_065681.1:p.Ala639Thr",
        "hgvsWellDefined": "NP_065681.1:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS525983"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645450872",
      "coordinates": [
        {
          "allele": "A",
          "end": 2147,
          "referenceAllele": "G",
          "start": 2146
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "NM_020975.5:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_066124.1:p.Ala639Thr",
        "hgvsWellDefined": "NP_066124.1:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS526025"
    },
    {
      "@id": "http://reg.genome.network/allele/PA645450872",
      "coordinates": [
        {
          "allele": "A",
          "end": 2105,
          "referenceAllele": "G",
          "start": 2104
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "NM_020975.6:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_066124.1:p.Ala639Thr",
        "hgvsWellDefined": "NP_066124.1:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS670171",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000355710.8:c.1915G>A"
          },
          "RefSeq": {
            "hgvs": "NM_020975.6:c.1915G>A"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000347942.3:p.Ala639Thr"
          },
          "RefSeq": {
            "hgvs": "NP_066124.1:p.Ala639Thr"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829941632",
      "coordinates": [
        {
          "allele": "A",
          "end": 2105,
          "referenceAllele": "G",
          "start": 2104
        }
      ],
      "gene": "http://reg.genome.network/gene/GN009967",
      "geneNCBI_id": 5979,
      "geneSymbol": "RET",
      "hgvs": [
        "NM_020630.6:c.1915G>A"
      ],
      "proteinEffect": {
        "hgvs": "NP_065681.1:p.Ala639Thr",
        "hgvsWellDefined": "NP_065681.1:p.Ala639Thr"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS728447"
    }
  ],
  "type": "nucleotide"
}