Canonical Allele Identifier: CA256587

Gene: SCN1A

Linked Data

• ClinVar Variation Id: 12883
• ClinVar RCV Id: RCV000013743 ; RCV000059471 ; RCV000686817 ; RCV001253103 ; RCV001311218 ; RCV002316193
• dbSNP Id: rs121918623
• gnomAD v4: 2-166038098-G-A
• COSMIC: COSM1400796 ; COSM1400797 ; COSM4786958
• MyVariant Identifiers: chr2:g.166894608G>A (hg19) ; chr2:g.166038098G>A (hg38)
• PubMed: PMID:10521305 ; PMID:10742094

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.166038098G>A , CM000664.2:g.166038098G>A	GRCh38
NC_000002.11:g.166894608G>A , CM000664.1:g.166894608G>A	GRCh37
NC_000002.10:g.166602854G>A	NCBI36
NG_011906.1:g.40542C>T , LRG_8:g.40542C>T

Transcript Alleles

HGVS	Amino-acid change
ENST00000689288.1:c.*660C>T	ENSP00000509637.1:n.*660C>T
ENST00000303395.9:c.2624C>T	ENSP00000303540.4:p.Thr875Met
ENST00000635750.1:c.2591C>T	ENSP00000490799.1:p.Thr864Met
ENST00000635776.1:c.2591C>T	ENSP00000490692.1:p.Thr864Met
ENST00000636194.1:c.*117C>T	ENSP00000490288.1:n.*117C>T
ENST00000636759.1:c.*2414C>T	ENSP00000490895.1:n.*2414C>T
ENST00000637968.1:n.2876C>T
ENST00000637988.1:c.2591C>T	ENSP00000490780.1:p.Thr864Met
ENST00000640036.1:c.2591C>T	ENSP00000491573.1:p.Thr864Met
ENST00000641575.1:c.2588C>T	ENSP00000492917.1:p.Thr863Met
ENST00000641603.1:c.2624C>T	ENSP00000492945.1:p.Thr875Met
ENST00000641996.1:c.*2178C>T	ENSP00000493054.1:n.*2178C>T
ENST00000671940.1:c.*567C>T	ENSP00000500336.1:n.*567C>T
ENST00000673490.1:n.5097C>T
ENST00000674923.1:c.2624C>T MANE Select	ENSP00000501589.1:p.Thr875Met
ENST00000303395.8:c.2624C>T	ENSP00000303540.4:p.Thr875Met
ENST00000375405.7:c.2591C>T	ENSP00000364554.3:p.Thr864Met
ENST00000409050.1:c.2540C>T	ENSP00000386312.1:p.Thr847Met
ENST00000423058.6:c.2624C>T	ENSP00000407030.2:p.Thr875Met
NM_001165963.1:c.2624C>T	NP_001159435.1:p.Thr875Met
NM_001165964.1:c.2540C>T	NP_001159436.1:p.Thr847Met
NM_001202435.1:c.2624C>T	NP_001189364.1:p.Thr875Met
NM_006920.4:c.2591C>T , LRG_8t1:c.2591C>T	NP_008851.3:p.Thr864Met
XM_011511598.1:c.2624C>T	XP_011509900.1:p.Thr875Met
XM_011511599.1:c.2624C>T	XP_011509901.1:p.Thr875Met
XM_011511600.1:c.2624C>T	XP_011509902.1:p.Thr875Met
XM_011511601.1:c.2624C>T	XP_011509903.1:p.Thr875Met
XM_011511602.1:c.2624C>T	XP_011509904.1:p.Thr875Met
XM_011511603.1:c.2621C>T	XP_011509905.1:p.Thr874Met
XM_011511604.1:c.2591C>T	XP_011509906.1:p.Thr864Met
XM_011511605.1:c.2588C>T	XP_011509907.1:p.Thr863Met
XM_011511606.1:c.2540C>T	XP_011509908.1:p.Thr847Met
XM_011511607.1:c.2624C>T	XP_011509909.1:p.Thr875Met
XR_922981.1:n.2808C>T
NM_001165963.2:c.2624C>T	NP_001159435.1:p.Thr875Met
NM_001165964.2:c.2540C>T	NP_001159436.1:p.Thr847Met
NM_001202435.2:c.2624C>T	NP_001189364.1:p.Thr875Met
NM_001353948.1:c.2624C>T	NP_001340877.1:p.Thr875Met
NM_001353949.1:c.2591C>T	NP_001340878.1:p.Thr864Met
NM_001353950.1:c.2591C>T	NP_001340879.1:p.Thr864Met
NM_001353951.1:c.2591C>T	NP_001340880.1:p.Thr864Met
NM_001353952.1:c.2591C>T	NP_001340881.1:p.Thr864Met
NM_001353954.1:c.2588C>T	NP_001340883.1:p.Thr863Met
NM_001353955.1:c.2588C>T	NP_001340884.1:p.Thr863Met
NM_001353957.1:c.2540C>T	NP_001340886.1:p.Thr847Met
NM_001353958.1:c.2540C>T	NP_001340887.1:p.Thr847Met
NM_001353960.1:c.2537C>T	NP_001340889.1:p.Thr846Met
NM_001353961.1:c.182C>T	NP_001340890.1:p.Thr61Met
NM_006920.5:c.2591C>T	NP_008851.3:p.Thr864Met
NR_148667.1:n.2996C>T
XR_001738883.1:n.3010C>T
XR_001738884.1:n.2982C>T
NM_001165963.3:c.2624C>T	NP_001159435.1:p.Thr875Met
NM_001165964.3:c.2540C>T	NP_001159436.1:p.Thr847Met
NM_001202435.3:c.2624C>T	NP_001189364.1:p.Thr875Met
NM_001353948.2:c.2624C>T	NP_001340877.1:p.Thr875Met
NM_001353949.2:c.2591C>T	NP_001340878.1:p.Thr864Met
NM_001353950.2:c.2591C>T	NP_001340879.1:p.Thr864Met
NM_001353951.2:c.2591C>T	NP_001340880.1:p.Thr864Met
NM_001353952.2:c.2591C>T	NP_001340881.1:p.Thr864Met
NM_001353954.2:c.2588C>T	NP_001340883.1:p.Thr863Met
NM_001353955.2:c.2588C>T	NP_001340884.1:p.Thr863Met
NM_001353957.2:c.2540C>T	NP_001340886.1:p.Thr847Met
NM_001353958.2:c.2540C>T	NP_001340887.1:p.Thr847Met
NM_001353960.2:c.2537C>T	NP_001340889.1:p.Thr846Met
NM_001353961.2:c.182C>T	NP_001340890.1:p.Thr61Met
NM_006920.6:c.2591C>T	NP_008851.3:p.Thr864Met
NR_148667.2:n.2977C>T
NM_001165963.4:c.2624C>T MANE Select	NP_001159435.1:p.Thr875Met