Canonical Allele Identifier: CA009600
Gene: MLH1 HGNC NCBI

Linked Data

ClinVar Variation Id: 90135
dbSNP Id: rs111052004
gnomAD v2: 3-37035040-T-C
gnomAD v4: 3-36993549-T-C

Genomic Alleles

HGVS Genome Assembly
NC_000003.12:g.36993549T>C , CM000665.2:g.36993549T>C GRCh38
NC_000003.11:g.37035040T>C , CM000665.1:g.37035040T>C GRCh37
NC_000003.10:g.37010044T>C NCBI36
NG_007109.2:g.5200T>C , LRG_216:g.5200T>C
NG_008418.1:g.4756A>G

Transcript Alleles

HGVS Amino-acid change
ENST00000413740.2:c.2T>C ENSP00000416476.2:p.Met1Thr
ENST00000450420.6:c.2T>C ENSP00000393006.2:p.Met1Thr
ENST00000456676.7:c.2T>C ENSP00000416687.3:p.Met1Thr
ENST00000458009.6:c.2T>C ENSP00000411066.2:p.Met1Thr
ENST00000616768.6:c.2T>C ENSP00000480669.3:p.Met1Thr
ENST00000673673.2:c.2T>C ENSP00000500979.2:p.Met1Thr
ENST00000231790.8:c.2T>C MANE Select ENSP00000231790.3:p.Met1Thr
ENST00000432299.6:c.2T>C ENSP00000416783.1:p.Met1Thr
ENST00000442249.6:n.17T>C
ENST00000673713.1:n.33T>C
ENST00000673715.1:c.2T>C ENSP00000501301.1:p.Met1Thr
ENST00000673897.1:c.2T>C ENSP00000501109.1:p.Met1Thr
ENST00000673899.1:c.2T>C ENSP00000501030.1:p.Met1Thr
ENST00000673947.1:c.2T>C ENSP00000501304.1:p.Met1Thr
ENST00000673972.1:c.2T>C ENSP00000501281.1:p.Met1Thr
ENST00000674111.1:c.2T>C ENSP00000501162.1:p.Met1Thr
ENST00000231790.6:c.2T>C ENSP00000231790.2:p.Met1Thr
ENST00000432299.5:c.2T>C ENSP00000416783.1:p.Met1Thr
ENST00000442249.5:c.2T>C ENSP00000387511.1:p.Met1Thr
ENST00000454028.5:c.2T>C ENSP00000392649.1:p.Met1Thr
ENST00000457004.5:c.2T>C ENSP00000407773.1:p.Met1Thr
ENST00000536378.5:c.-631T>C ENSP00000444286.2:n.-631T>C
NM_000249.3:c.2T>C , LRG_216t1:c.2T>C NP_000240.1:p.Met1Thr
NM_001258271.1:c.2T>C NP_001245200.1:p.Met1Thr
NM_001258273.1:c.-631T>C NP_001245202.1:n.-631T>C
XM_005265161.1:c.2T>C XP_005265218.1:p.Met1Thr
XM_005265164.1:c.-717T>C XP_005265221.1:n.-717T>C
NM_001167617.2:c.-515T>C NP_001161089.1:n.-515T>C
NM_001167618.2:c.-944T>C NP_001161090.1:n.-944T>C
NM_001167619.2:c.-857T>C NP_001161091.1:n.-857T>C
NM_001258274.2:c.-1094T>C NP_001245203.1:n.-1094T>C
NM_001354615.1:c.-625T>C NP_001341544.1:n.-625T>C
NM_001354616.1:c.-625T>C NP_001341545.1:n.-625T>C
NM_001354617.1:c.-717T>C NP_001341546.1:n.-717T>C
NM_001354618.1:c.-949T>C NP_001341547.1:n.-949T>C
NM_001354619.1:c.-1073T>C NP_001341548.1:n.-1073T>C
NM_001354620.1:c.-283T>C NP_001341549.1:n.-283T>C
NM_001354621.1:c.-1042T>C NP_001341550.1:n.-1042T>C
NM_001354622.1:c.-1155T>C NP_001341551.1:n.-1155T>C
NM_001354623.1:c.-1064T>C NP_001341552.1:n.-1064T>C
NM_001354624.1:c.-825T>C NP_001341553.1:n.-825T>C
NM_001354625.1:c.-723T>C NP_001341554.1:n.-723T>C
NM_001354626.1:c.-820T>C NP_001341555.1:n.-820T>C
NM_001354627.1:c.-1052T>C NP_001341556.1:n.-1052T>C
NM_001354628.1:c.2T>C NP_001341557.1:p.Met1Thr
NM_001354629.1:c.2T>C NP_001341558.1:p.Met1Thr
NM_001354630.1:c.2T>C NP_001341559.1:p.Met1Thr
XM_005265161.2:c.2T>C XP_005265218.1:p.Met1Thr
XM_017006450.2:c.-810T>C XP_016861939.1:n.-810T>C
NM_000249.4:c.2T>C MANE Select NP_000240.1:p.Met1Thr
NM_001167617.3:c.-515T>C NP_001161089.1:n.-515T>C
NM_001167618.3:c.-944T>C NP_001161090.1:n.-944T>C
NM_001167619.3:c.-857T>C NP_001161091.1:n.-857T>C
NM_001258271.2:c.2T>C NP_001245200.1:p.Met1Thr
NM_001258273.2:c.-631T>C NP_001245202.1:n.-631T>C
NM_001258274.3:c.-1094T>C NP_001245203.1:n.-1094T>C
NM_001354615.2:c.-625T>C NP_001341544.1:n.-625T>C
NM_001354616.2:c.-625T>C NP_001341545.1:n.-625T>C
NM_001354617.2:c.-717T>C NP_001341546.1:n.-717T>C
NM_001354618.2:c.-949T>C NP_001341547.1:n.-949T>C
NM_001354619.2:c.-1073T>C NP_001341548.1:n.-1073T>C
NM_001354620.2:c.-283T>C NP_001341549.1:n.-283T>C
NM_001354621.2:c.-1042T>C NP_001341550.1:n.-1042T>C
NM_001354622.2:c.-1155T>C NP_001341551.1:n.-1155T>C
NM_001354623.2:c.-1064T>C NP_001341552.1:n.-1064T>C
NM_001354624.2:c.-825T>C NP_001341553.1:n.-825T>C
NM_001354625.2:c.-723T>C NP_001341554.1:n.-723T>C
NM_001354626.2:c.-820T>C NP_001341555.1:n.-820T>C
NM_001354627.2:c.-1052T>C NP_001341556.1:n.-1052T>C
NM_001354628.2:c.2T>C NP_001341557.1:p.Met1Thr
NM_001354629.2:c.2T>C NP_001341558.1:p.Met1Thr
NM_001354630.2:c.2T>C NP_001341559.1:p.Met1Thr